| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,286,457 – 8,286,566 |
| Length | 109 |
| Max. P | 0.740602 |
| Location | 8,286,457 – 8,286,566 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -35.92 |
| Consensus MFE | -21.27 |
| Energy contribution | -21.08 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8286457 109 + 20766785 AAAAACCAGAGUGGCCGGCGGCGGACUCGAUUCAUUUCGGAUGAAACAUUUUAAAUGAUU-CCA--UGCCUGGCACCGCAUGCAAUUUGCCGCCUGCCGUCG-CA-------ACGCAUUC ........((.((((.(((((((((...((.((((((..((((...))))..)))))).)-)((--(((........)))))...))))))))).)))))).-..-------........ ( -36.80) >DroPse_CAF1 13656 107 + 1 UGGAGCCGGACUGGUCUGCGGUGGGGUCCAUUCAUUUCGGAUGCAACAUUUUAAAUGAUUUCCA--UGACUGGGACCGCAUGCAAUUUGCCGCUUGCAGUGC-CA----------CCUUC ....((.(((....)))))((((((((((..((((((..((((...))))..))))))....((--....)))))))(((.((........)).)))....)-))----------))... ( -32.50) >DroEre_CAF1 8334 110 + 1 AA-AAGCAGAGUGGCCGGCGGCGAAGUCGAUUCAUUUCGGAUGAAACAUUUUAAAUGAUU-CCAUAUGCCUGGCACCGCAUGCAAUUUGCCGCCUGCCGUCG-CA-------ACGCAUUC ..-..((.((.((((.(((((((((...((.((((((..((((...))))..)))))).)-)..(((((........)))))...))))))))).)))))))-).-------........ ( -38.00) >DroYak_CAF1 8478 111 + 1 AAAAAGCAGAGUGGCCGGCGGCAUAGUCGAUUCAUUUUGGAUGAAACAUUUUAAAUGAUU-CCAUAUGCCUGGCACCGUAUGCAAUUUGCCGCCUGCCGUCG-CC-------ACGCAUUC .....((...(((((((((((((((...((.((((((..((((...))))..)))))).)-)..)))))).((((............))))....))))..)-))-------)))).... ( -37.80) >DroAna_CAF1 8178 117 + 1 AAAAGCCGGAAACGCCUGCGGCCGAGUCAAUUCAUUUCGGAUGCAACAUUUUAAAUGAUU-CUA--CGGCCGCCACCGCAUGCAAUUUGCCGCAUGCAGCCAGCAGCUCUUGCCACAUUC ....((.((........(((((((((.....((((((..((((...))))..))))))..-)).--)))))))....((((((........))))))..)).)).((....))....... ( -37.90) >DroPer_CAF1 12292 107 + 1 UGGAGCCGGACUGGUCUGCGGUGGGGUCCAUUCAUUUCGGAUGCAACAUUUUAAAUGAUUUCCA--UGACUGGGACCGCAUGCAAUUUGCCGCUUGCAAUGC-CA----------CCUUC ....((.(((....)))))((((((((((..((((((..((((...))))..))))))....((--....)))))))(((.((........)).)))....)-))----------))... ( -32.50) >consensus AAAAACCAGAGUGGCCGGCGGCGGAGUCGAUUCAUUUCGGAUGAAACAUUUUAAAUGAUU_CCA__UGCCUGGCACCGCAUGCAAUUUGCCGCCUGCAGUCG_CA_______ACGCAUUC .............((.(((((((((......((((((..((((...))))..))))))...(((......)))............))))))))).))....................... (-21.27 = -21.08 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:46 2006