Locus 2245

Sequence ID 2R_DroMel_CAF1
Location 8,284,857 – 8,284,970
Length 113
Max. P 0.609130
window3694

overview

Window 4

Location 8,284,857 – 8,284,970
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.80
Mean single sequence MFE -29.82
Consensus MFE -17.48
Energy contribution -18.65
Covariance contribution 1.17
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.59
SVM decision value 0.15
SVM RNA-class probability 0.609130
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8284857 113 - 20766785
-----UUUUUGUUGGUCGAUCGGGGC-AAGCAGAUGCGCCUGGUGGCUUCAUUAAAAUUAACAAAACUUAAUUGCAGCUUUC-GUGGCACGAAACAUGCUGCAAAUGCGUGUUCCAAUCU
-----............(((.(((((-(.(((((((.(((....)))..))))..................(((((((((((-(.....)))))...))))))).))).)))))).))). ( -33.90)
>DroPse_CAF1 12137 98 - 1
-------------------UUGGGAC-UGGCAGAUGCGGCAGG-AGCUUCAUUAAAAUUAACAAAACUUAAUUGCAGCUUUC-GUGGCACGUAGCAUGUUGCAAAUGCGUGUUCCAAUCC
-------------------(((((((-..(((..(((((((..-.(((.(.....((((((......))))))...(((...-..)))..).))).)))))))..)))..)))))))... ( -28.70)
>DroWil_CAF1 12430 115 - 1
UUUUCCUUUUGCU-GUUGUU--GAAG-GAGCAGAUGCGACAAA-AGCUUCAUUAAAAUUAACAAAAUUUAAUUGCAGCUUUCGGUGGCACGUAGCAUGUUGCAAAUGCGUAGGGCAAUCU
...((((((.((.-...)).--))))-))(((..(((((((((-((((.((...(((((.....)))))...)).)))))).....((.....)).)))))))..)))............ ( -29.40)
>DroYak_CAF1 6920 104 - 1
--------------UUUGGACGGGGC-AAGCAGAUGCGCCUGGUGGCUUCAUUAAAAUUAACAAAACUUAAUUGCAGCUUUC-GUGGCACGAAACAUGCUGCAAAUGCGUGUUCCAAUCU
--------------.......(((((-(.(((((((.(((....)))..))))..................(((((((((((-(.....)))))...))))))).))).))))))..... ( -32.00)
>DroAna_CAF1 6741 113 - 1
-----CAUUUAUUUAUAUAUAUGUGCAUAGCAGAUGCGGCUGG-GGCUUCAUUAAAAUUAACAAAACUUAAUUGCAGCUUUC-GUGGCACGAAACAUGCUGCAAAUGCGUGUUCCAAUCU
-----...................((((.....))))(..(((-(((..((((..((((((......))))))(((((((((-(.....)))))...))))).))))...))))))..). ( -26.20)
>DroPer_CAF1 10761 98 - 1
-------------------UUGGGAC-UGGCAGAUGCGGCAGG-AGCUUCAUUAAAAUUAACAAAACUUAAUUGCAGCUUUC-GUGGCACGUAGCAUGUUGCAAAUGCGUGUUCCAAUCC
-------------------(((((((-..(((..(((((((..-.(((.(.....((((((......))))))...(((...-..)))..).))).)))))))..)))..)))))))... ( -28.70)
>consensus
_______________U_G_UCGGGAC_UAGCAGAUGCGGCAGG_AGCUUCAUUAAAAUUAACAAAACUUAAUUGCAGCUUUC_GUGGCACGAAACAUGCUGCAAAUGCGUGUUCCAAUCU
.....................(((((...(((..((((((.....((...(((((............))))).)).(((......))).........))))))..)))..)))))..... (-17.48 = -18.65 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:45 2006