Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,284,663 – 8,284,766 |
Length | 103 |
Max. P | 0.725943 |
Location | 8,284,663 – 8,284,766 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.06 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -21.15 |
Energy contribution | -21.91 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.10 |
Mean z-score | -1.93 |
Structure conservation index | 0.64 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8284663 103 - 20766785 UAUUGCCCC-UGGGGUUGAUCCU--------GAUCCCCA--------GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAAUGCAUAUAAAGCGAAGCAUAUAUUUGUUUCAGCAACUGC ..(((((((-(((((((......--------)).)))))--------)..........((((((....))))))))))))...........((((((((......)))))).))...... ( -36.70) >DroSec_CAF1 7644 103 - 1 UAUUGCCCC-UGGGGUUGAUCCU--------GAUCCCCA--------GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAACGCAUAUAAAGCGAAACAUAUAUUUGUUGCAGCAACCUC ...((((((-(((((((......--------)).)))))--------).....)))))((((((....))))))((((....)).......((..((((......))))...))..)).. ( -34.10) >DroSim_CAF1 5958 103 - 1 UAUUGCCCC-UGGGGUUGAUCCU--------GAUCCCCA--------GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAACGCAUAUAAAGCGAAACAUAUAUUUGUUGCAACAACUGC ..(((((((-(((((((......--------)).)))))--------)..........((((((....)))))))))))).(((.......))).((((......))))(((.....))) ( -33.40) >DroEre_CAF1 6600 99 - 1 UAUUGACCCUUGGGGUUGAU------CCUCCGAUCCCCA--------GAUCCUG-ACAGAUUGCAGCUGCAAUCGGGGAAACGCAUA-AAAGUCAACCGUAUAUU----UCAGCGAC-GC ........((.(((((((..------....))))))).)--------)....((-((.((((((....))))))(.(....).)...-...))))..(((.....----...)))..-.. ( -27.80) >DroYak_CAF1 6708 119 - 1 UAUUGCCCCUUGGGGUUGAUCCUGAUCCUCCGAUCCCCAGAUCGCCAGAUCCUG-ACAGAUUGCAGCUGCAAUCGGGAAAACGCAUACAAAGCUAGCCAUAUAUUUGUUUUAGCGACUGC ....((((....))))...((((((((...(((((....)))))...))))...-...((((((....))))))))))...(((..(((((..((....))..)))))....)))..... ( -32.00) >consensus UAUUGCCCC_UGGGGUUGAUCCU________GAUCCCCA________GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAACGCAUAUAAAGCGAAACAUAUAUUUGUUUCAGCAACUGC ..((((((..(((((...................)))))...................((((((....)))))))))))).(((.......))).......................... (-21.15 = -21.91 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:44 2006