Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,281,126 – 8,281,234 |
Length | 108 |
Max. P | 0.594705 |
Location | 8,281,126 – 8,281,234 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 75.46 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -10.96 |
Energy contribution | -12.05 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.30 |
Mean z-score | -2.08 |
Structure conservation index | 0.39 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8281126 108 - 20766785 GCACGACAAGUUUGAAACAUCAACAUGGGUUCGAUUG-----GGGUUUGUAUU----GAAAUCCGAGCUGUGUAAUUAUCGGAAAAGAUAUUAUUCGAAUUGGAUCGUGUAAACAUA ((((..((.(((.((....))))).))(((((((((.-----((((..(((((----....(((((............)))))...))))).)))).)))))))))))))....... ( -26.50) >DroPse_CAF1 8625 116 - 1 ACACGCCAAGUUUGGUACUUCAACAUUGAUUUGUGCCCCGCAG-GACAGGAUCGCAAGAUACCAGGAUUCCGGGGGUAGCGCGCAGAAUAUUACCCGAAUUGGAUCAUAUAAACAUA .....((((.((.((((..(((....)))((((((((((.(.(-((..(((((....))).)).....)))).)))....)))))))....)))).)).)))).............. ( -29.50) >DroSec_CAF1 3947 107 - 1 GAACGACAAGUUCGAAACAUCAACAUGGUUUCGAUUG-----G-GUUUGUAUU----GAAAUCGGAGCUGUGUAAUUAUCGGAAAAGAUAUUAUUCGAAUUGGAUCGUGUAAACAUA ..((((..((((((((......((((((((((((((.-----(-((....)))----..))))))))))))))...((((......))))...))))))))...))))......... ( -29.30) >DroSim_CAF1 3083 107 - 1 GCACGACAAGUUCGAAACAUCAACAUGGUUUCGAUUG-----U-GUUUGUAUU----GAAAUCGGAGCUGUGUAAUUAUCGGAAAAGAUAUUAUUCGAAUUGGAUCGUGUAAACAUA ((((((..((((((((......((((((((((((((.-----.-((....)).----..))))))))))))))...((((......))))...))))))))...))))))....... ( -33.50) >DroEre_CAF1 3134 90 - 1 GCACGACAAGU-UGAAACAUCAACAUUAGUUCGAUUG--------------------------AGAGCUGUGUAAUUAUCGGAAAAGAUAUUAUUCGAAUUGGAUCAUGUAAACAUA ((((.....((-(((....)))))...(((((.....--------------------------.))))))))).....(((((.((....)).)))))................... ( -16.00) >DroYak_CAF1 3065 113 - 1 ACACGACAAGUUUGAAGCAUCAACAUUUGUUCGAUUCGAUUGG-CGUUGGAUUG---GAAAUCCGAGCUGUGUAAUUAUCGGAAAAGAUAUUAUUCGAAUUGGAUCGUGUAAACAUA (((((((((((((((....)))).)))))((((((((((..((-(.((((((..---...)))))))))..(((((.(((......))))))))))))))))))))))))....... ( -31.90) >consensus GCACGACAAGUUUGAAACAUCAACAUGGGUUCGAUUG_____G_GUUUGUAUU____GAAAUCAGAGCUGUGUAAUUAUCGGAAAAGAUAUUAUUCGAAUUGGAUCGUGUAAACAUA ((((((..((((((((......((((.(((((................................)))))))))...((((......))))...))))))))...))))))....... (-10.96 = -12.05 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:42 2006