Locus 2239

Sequence ID 2R_DroMel_CAF1
Location 8,275,177 – 8,275,270
Length 93
Max. P 0.582991
window3686

overview

Window 6

Location 8,275,177 – 8,275,270
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.27
Mean single sequence MFE -23.43
Consensus MFE -15.71
Energy contribution -15.93
Covariance contribution 0.23
Combinations/Pair 1.22
Mean z-score -1.47
Structure conservation index 0.67
SVM decision value 0.10
SVM RNA-class probability 0.582991
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8275177 93 + 20766785
CUCUUUCCACAUUGCCCAACUGCAGUGCAAUAUAAGCAAACCAGUGCGAAUUGGCCAAGCCAAGCAAAUAAGGGUAAGC----CCUGCAGUGAUGGA
.....((((((((((...((((...(((.......)))...))))((...(((((...))))))).....((((....)----))))))))).)))) ( -28.90)
>DroVir_CAF1 1656 97 + 1
AUCAUUUCAUAUUGCCCAGCUUCAGUGCAACAUAAGCAAGCCCGUGCGCAUCGGCCAGGCCAAGCAGAUACGGGUUUGUGAUCACUGGCAUAUUUGA
......(((...((((..((......)).......((((((((((((((...(((...)))..)).).))))))))))).......))))....))) ( -29.10)
>DroSec_CAF1 1677 93 + 1
CUCUUUCCACAUUGCCCAACUGCAGUGCAAUAUAAGCAAACCUGUGCGAAUUGGCCAAGCCAAGCAAAUAAGGGUAAGC----UCUGCACUAAUGCA
.........((((((......))))))........(((.....((((...(((((...))))).......((((....)----)))))))...))). ( -22.20)
>DroEre_CAF1 1776 93 + 1
CUCUUUUCACAUUGCCCAACUGCAAUGCAAUAUAAGCAAACCAGUGCGAAUUGGUCAAGCCAAGCAAAUAAGGGUAAGC----CCUGCAUAAAUGUA
........(((((((......)).((((.......((..((((((....))))))...))..........((((....)----))))))).))))). ( -20.00)
>DroYak_CAF1 1534 93 + 1
CUCUUUUCACAUUGCCCAACUGCAGUGCAAUAUAAGCAAACCAGUGCGAAUAGGCCAAGCCAAGCAAAUAAGGGUAAGA----UCUGCAGCGAUUUA
............(((((.((((...(((.......)))...))))((.....(((...)))..))......)))))(((----((......))))). ( -19.70)
>DroAna_CAF1 1549 88 + 1
CUCGUUUCACAUUGCCCAGCUGCAGUGCAAUAUAAGCAAACCAGUGCGAAUCGGCCAGGCCAAGUCAAUUAGGGUAGGA---------AUCAAUCCA
............(((((.((((...(((.......)))...))))..((...(((...)))...)).....)))))(((---------.....))). ( -20.70)
>consensus
CUCUUUUCACAUUGCCCAACUGCAGUGCAAUAUAAGCAAACCAGUGCGAAUUGGCCAAGCCAAGCAAAUAAGGGUAAGC____CCUGCAGUAAUGCA
...........((((((.((((...(((.......)))...))))((.....(((...)))..))......)))))).................... (-15.71 = -15.93 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:37 2006