Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,271,662 – 8,271,761 |
Length | 99 |
Max. P | 0.618341 |
Location | 8,271,662 – 8,271,761 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -15.16 |
Energy contribution | -16.60 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.94 |
Structure conservation index | 0.57 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618341 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8271662 99 + 20766785 UCCUAUACAUUUUUAGCAAUGGCUA-------------AUUUAAAUUUUCCCGCCACCAUUGGUGGG-AUUGGAACUGGUGGUCAGUUCUGGAACGUGGUGAAAA-AAGGAGAA ((((........(((((....))))-------------)......(((((((((((((...))))(.-.(..((((((.....))))))..)..))))).)))))-.))))... ( -30.60) >DroSec_CAF1 58834 99 + 1 ACCUAAAUC-UUUUAGCAAUGGCUA-------------AUUUAAAUUUUCCCGCCACCAUUGGUGGG-AUUGGAACUAGUGGUCAGUUCUGAAACGUGGUGAAAAUAAGGAGAA .(((.....-..(((((....))))-------------).....((((((((((((((...))))(.-.(..(((((.......)))))..)..))))).)))))).))).... ( -27.20) >DroSim_CAF1 61105 99 + 1 ACCUAAACC-UUUUAGCAAUGGCUA-------------AUUUAAAUUUUCCCGCCAUCAUUGGUGGG-AUUGGAACUAAUGGUCAGUUCUGGAACGUGGUGAAAAUAAGGAGAA .(((..(((-..(((((....))))-------------).........((((((((....)))))))-)(..(((((.......)))))..).....))).......))).... ( -27.50) >DroEre_CAF1 58764 113 + 1 ACCUAAAAAU-GUUACCAAUGCCUAAAUGCCUAGACCCAUUUAAAUUUUACCGCCAACAUUGGUGGGAAAUGGAACAAGUGGUCAGAUCUGGAACGUGGUGAAAAAGAGGAGAA .(((......-.((((((...((....((((.....((((((........((((((....)))))).)))))).......)).)).....))....)))))).....))).... ( -28.00) >DroYak_CAF1 61004 105 + 1 ACCUAAAAAUUCUUAGCAAUGUUAAAAUA--------CAUUUAAAAUUUCCCGCCAACAUUGGUGGAAAUUGGAACGAGUGG-CAAUUCUGAAACGUGGUGAAAAAGAGGGGAA .(((.....(((((.((.(((((......--------.......(((((((.((((....))))))))))).....((((..-..))))...))))).))....)))))))).. ( -19.50) >consensus ACCUAAAAAUUUUUAGCAAUGGCUA_____________AUUUAAAUUUUCCCGCCAACAUUGGUGGG_AUUGGAACUAGUGGUCAGUUCUGGAACGUGGUGAAAAAAAGGAGAA .(((......(((((.((................................((((((....))))))...((((((((.......))))))))....)).)))))...))).... (-15.16 = -16.60 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:35 2006