| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,264,627 – 8,264,728 |
| Length | 101 |
| Max. P | 0.707494 |
| Location | 8,264,627 – 8,264,728 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.03 |
| Mean single sequence MFE | -14.02 |
| Consensus MFE | -0.78 |
| Energy contribution | -1.06 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.06 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8264627 101 + 20766785 -----------ACC--UAUUCAUAGAUAA--AAAAAAAGAAGCUUUCAUAUAG----GUUUCAUUUUCAUGUAUGUUAUCUUCGGGAAAACCAAACAGAUUAUAAAUCAGAUCAACAUAU -----------...--.............--.......(((((((......))----)))))........(((((((((((..((.....)).....(((.....))))))).))))))) ( -15.70) >DroSec_CAF1 51823 109 + 1 AUAUCUAACUAACC--UAUUCAUAGAUAA--A---AAAGAAGCUUUCAUACAU----GUUUCAUUUUCAUGUAUGUUAUCUUAGGGAAAACCAAACAGAUUAUAAAUCAGAUCAACAUAU .((((((.......--......)))))).--.---...(((((..........----)))))........(((((((((((..((.....)).....(((.....))))))).))))))) ( -15.32) >DroSim_CAF1 54098 109 + 1 AUAUCUAACCCACC--UAUUCAUAGAUAA--A---AAAGAAGCUUUCAUAUAG----GUUUCAUUUUCAUGUAUGUUAUCUUAGGAAAAACCAAACAGAUUAUAAAUCAGAUCAACAUAU ............((--((..((((.((.(--(---((.(((((((......))----))))).)))).)).))))......))))............((((........))))....... ( -16.70) >DroEre_CAF1 51802 95 + 1 -----------ACU--UAUUCAUAGAUAAUAA---AAAAAACCCCUCAUUUAUGACUGUUUCAUU---------UUUAUCUAAGUGAAGUCCAAACUGAUUAUAACUCAGAAAAACAUAU -----------(((--(...(.(((((((.((---(..((((...(((....)))..))))..))---------)))))))).)..)))).....((((.......)))).......... ( -11.00) >DroYak_CAF1 53937 99 + 1 -----------ACCUCUAUUCAUAGAUAA--A---AAGAAAGCCUUCAUAUACGUAGCUUUCAUUUCCAU----UUUAUCUAAGUGAAAACCAAACAGAUUAUAUCUCAGCC-AGCAUAU -----------.......(((((((((((--(---(.((((((...(......)..)))))).......)----)))))))..)))))........................-....... ( -11.40) >consensus ___________ACC__UAUUCAUAGAUAA__A___AAAGAAGCUUUCAUAUAG____GUUUCAUUUUCAUGUAUGUUAUCUUAGGGAAAACCAAACAGAUUAUAAAUCAGAUCAACAUAU ..................(((..((((((........((((......................))))........))))))...)))................................. ( -0.78 = -1.06 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:34 2006