Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,255,396 – 8,255,498 |
Length | 102 |
Max. P | 0.810483 |
Location | 8,255,396 – 8,255,498 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 85.13 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -25.35 |
Energy contribution | -25.57 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -1.81 |
Structure conservation index | 0.87 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810483 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8255396 102 + 20766785 UCCCAUCCGCGCCCA----------CGCCCACACACAUUUUUUGGCCAACGAUUUCCGCAGCCAAAUGGCCAACCGCCGCCUGCUGUUCCUGAUUUUCACAGGAAGCGGCGG ..(((...(((....----------)))............((((((...((.....))..)))))))))....(((((((......((((((.......))))))))))))) ( -31.00) >DroSec_CAF1 42731 102 + 1 UCCCAUCCGCGCCCA----------CGCCCACACACAUUUUUUGGCCAACGAUUUCCGCAGCCAAAUGGCCAACCGCCGCCUUCUGUUCCUGAUUUUCACAGGAAGCGGCGU ..(((...(((....----------)))............((((((...((.....))..))))))))).....((((((.((((((...........)))))).)))))). ( -28.60) >DroSim_CAF1 45077 102 + 1 UCCCAUCCGCGCCCA----------CGCCCACACACAUUUUUUGGCCAACGAUUUCCGCAGCCAAAUGGCCAACCGCCGCCUGCUGUUCCUGAUUUUCACAGGAAGCGGCGG ..(((...(((....----------)))............((((((...((.....))..)))))))))....(((((((......((((((.......))))))))))))) ( -31.00) >DroEre_CAF1 42518 96 + 1 UCCAUU------CCA----------CGCCCACACACAUUUUUUGGCCAACGAUUUCCGCAGCCAAAUGGCCACCCGCCGCCUGCUGUUCCUGAUUUUCACAGGAAGCGGCGG ......------...----------.(((...........((((((...((.....))..)))))).)))...(((((((......((((((.......))))))))))))) ( -28.30) >DroYak_CAF1 44354 96 + 1 UCCAUU------CCA----------CGCCCACACACAUUUUUUGGCCAACGAUUUCCGCAGCCAAAUGGCCAACCGCCGCCCGCUGUUCCUGAUUUUCACAGGAAGCGGCGG ......------...----------.((............((((((...((.....))..)))))).(((.....)))))((((((((((((.......)))).)))))))) ( -28.90) >DroAna_CAF1 45172 105 + 1 -----GCCUAGCCCACCUCCUGCUCCACCCACUACCA-UUUUUGGCCAAUGAUUUCCGCAGCCAAAUGGCCACCCGCUGCCUGCUUC-UCUGCUUUCCACAGGAAGCGGCGG -----.....(((......((((...........(((-....)))............))))......)))......(((((.(((((-.(((.......))))))))))))) ( -26.30) >consensus UCCCAUCCGCGCCCA__________CGCCCACACACAUUUUUUGGCCAACGAUUUCCGCAGCCAAAUGGCCAACCGCCGCCUGCUGUUCCUGAUUUUCACAGGAAGCGGCGG ..........................................((((((..................)))))).(((((((......((((((.......))))))))))))) (-25.35 = -25.57 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:30 2006