Locus 2233

Sequence ID 2R_DroMel_CAF1
Location 8,253,003 – 8,253,103
Length 100
Max. P 0.746123
window3678

overview

Window 8

Location 8,253,003 – 8,253,103
Length 100
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 91.04
Mean single sequence MFE -18.15
Consensus MFE -14.60
Energy contribution -15.10
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.80
SVM decision value 0.46
SVM RNA-class probability 0.746123
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8253003 100 - 20766785
UUUUCGAUUU-UUUGUCUUGUGUUUUUCGCUGCCUUUUUGUUUUGUUAAACACUUAAUAUUAGUUGUGGAAGUUGUAAAAAUAAUUUUUAUUGCUUGAGGA
(((((((...-........((((((..((..((......))..))..)))))).........((.(((((((((((....))))))))))).))))))))) ( -17.00)
>DroSec_CAF1 40340 101 - 1
UUUUCGAUUUUUUUGUCUUGUGUUUUUCGCUGCCUUUUUGUUUUGUUAAACACUUAAUAUUAGUUGUGGAAGUUGUAAAAAUAAUUUUUAUAGCUUGAGGA
(((((((............((((((..((..((......))..))..)))))).........((((((((((((((....))))))))))))))))))))) ( -20.30)
>DroSim_CAF1 42680 100 - 1
UUUUCGAUUU-UUUGUCUUGUGUUUUUCGCUGCCUUUUUGUUUUGUUAAACACUUAAUAUUAGUUGUGGAAGUUGUAAAAAUAAUUUUUAUAGCUUGAGGA
(((((((...-........((((((..((..((......))..))..)))))).........((((((((((((((....))))))))))))))))))))) ( -20.30)
>DroEre_CAF1 40094 88 - 1
UUUUGGAUUU-------------UUUUAGCUGCCUUUCUGUUUUGUUAAACACUUAAUAUUAGUUGUGGAAGUUGUAAAAAUCAUUUUUAUAGCUUGAGGA
.....(((((-------------((.(((((.((...(((...((((((....)))))).)))....)).))))).))))))).................. ( -15.00)
>consensus
UUUUCGAUUU_UUUGUCUUGUGUUUUUCGCUGCCUUUUUGUUUUGUUAAACACUUAAUAUUAGUUGUGGAAGUUGUAAAAAUAAUUUUUAUAGCUUGAGGA
................................((((..(((((....))))).........(((((((((((((((....))))))))))))))).)))). (-14.60 = -15.10 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:29 2006