| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,561,052 – 1,561,172 |
| Length | 120 |
| Max. P | 0.947283 |
| Location | 1,561,052 – 1,561,172 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.42 |
| Mean single sequence MFE | -27.78 |
| Consensus MFE | -24.71 |
| Energy contribution | -25.43 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1561052 120 - 20766785 UAGCAAUCAAUGGAGGCAGGGUGGAAAACGUAAUCUUUAAGCCACCCAGCCAUUUGUAUCCAAAAAAAACCUAUAAAUGGCUUUGUGCAGACAUAAAUAUCAAUUUGGUGGGGUAGCAUU ..((.(((.(((...(((((((((.................))))))(((((((((((.............)))))))))))...)))...)))...((((.....)))).))).))... ( -31.45) >DroSec_CAF1 10786 120 - 1 UAGCAAUCAAUGAAGGCAGGGUGGAAAACGUAAUCUUUAAGCCACCCAGCCAUUUGUAUCCAAAAAAAAUGUAUAAAUGGCUUUGUGUAGGCAUAAAUAUCAAUUUGGUGGGGUAGCAUU ..((.(((..((((((..(.((.....)).)..))))))..(((((..(((((((((((...........)))))))))))((((((....)))))).........)))))))).))... ( -31.40) >DroSim_CAF1 12322 119 - 1 UAGCAAUCAAUGAAGGCAGGGUGGAAAACGUAAUCUUUAAGCCACCCAGCCAUUUGUAUC-AAAAAAAAUGUAUAAAUGGCUUUGUGUAGGCAUAAAUAUCAAUUUGGUGGGGUAGCAUU ..((.(((..((((((..(.((.....)).)..))))))..(((((..(((((((((((.-.........)))))))))))((((((....)))))).........)))))))).))... ( -31.50) >DroEre_CAF1 11168 120 - 1 CAGCAAUCAAUGAAAGCAGGGUGGAAAGCGUAAUCUUUGGGCCACCCAGCAAUUUGUAUCCAAAAAAAAUCUAUAAAUGGCUUUGUGUAGACAUAAAUAUCAAUUUGGUGGGCUAGCAUU .(((.((((((((.....((((((((((......))))...))))))(((.(((((((.............))))))).)))(((((....)))))...)))..)))))..)))...... ( -25.02) >DroYak_CAF1 17164 119 - 1 GAGCAAUCAAUGAAGGCAGGGUGGAAAACGUAAUCUUUAAGCCACCCAGAAAUUUGUAUCCAAAA-AAAUUUAUAAAUGGCUUUGUGUACACAUAAAUAUCAAUUUAAUAGGGAAGCAUU ((....))..........((((((.................)))))).......(((.(((....-(((((.(((......((((((....))))))))).))))).....))).))).. ( -19.53) >consensus UAGCAAUCAAUGAAGGCAGGGUGGAAAACGUAAUCUUUAAGCCACCCAGCCAUUUGUAUCCAAAAAAAAUCUAUAAAUGGCUUUGUGUAGACAUAAAUAUCAAUUUGGUGGGGUAGCAUU ..((.(((.(((...(((((((((.................))))))(((((((((((.............)))))))))))...)))...)))...((((.....)))).))).))... (-24.71 = -25.43 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:54 2006