| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,219,890 – 8,219,983 |
| Length | 93 |
| Max. P | 0.703231 |
| Location | 8,219,890 – 8,219,983 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 83.03 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -16.23 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8219890 93 - 20766785 CCCCUCCAAAAAAAUGUUGCAUUCGCCAGCAGUUUUCUAUAAUUCGUGUUGGCCCUCUUUGGGGGUUGACUUGACGGUUUUUCGUUUUUUUUU .......(((((((((((((........))))...........(((.((..(((((.....)))))..)).)))........))))))))).. ( -21.80) >DroSec_CAF1 15663 89 - 1 CCCCUCCAAA-AAAUGUUGCAUUCGCCAGCAGUUUUCUAUAAUUCGUGUUGGCCCUCUAUGGGGGUUGACUUGACGGUUUUUCCUCUUU-U-- .....((.((-((.((((((....).))))).)))).......(((.((..(((((.....)))))..)).))).))............-.-- ( -20.40) >DroSim_CAF1 17679 90 - 1 CCCCUCCGAA-AAAUGUUGCAUUCGCCAGCAGUUUUCUAUAAUUCGUGUUGGCCCUCUUUGGGGGUUGACUUGACGGUUUUUCCUCUUUUU-- .....(((((-((.((((((....).))))).)))))......(((.((..(((((.....)))))..)).))).))..............-- ( -24.40) >DroAna_CAF1 20788 78 - 1 CCCCUCUGC--AAAUGUUGCAUUUGCCAGCAGUUUUCUAUAAUUUGCGUUG-CCUUCUU-G-GGGGUGGCUUAACGGCUUCC--------U-- ......(((--(.....))))...(((.((((...........))))((..-((((...-.-))))..)).....)))....--------.-- ( -20.20) >consensus CCCCUCCAAA_AAAUGUUGCAUUCGCCAGCAGUUUUCUAUAAUUCGUGUUGGCCCUCUUUGGGGGUUGACUUGACGGUUUUUCCUCUUU_U__ ..((..........((((((....).)))))............(((.((..(((((.....)))))..)).))).))................ (-16.23 = -15.97 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:22 2006