Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,216,771 – 8,216,876 |
Length | 105 |
Max. P | 0.693170 |
Location | 8,216,771 – 8,216,876 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.72 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -26.19 |
Energy contribution | -27.75 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.39 |
Structure conservation index | 0.75 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8216771 105 + 20766785 ----CUCCAUUCCGUUUCCCCGUCCAGUGGCAAAGC---CA----CACAUAGCUCCACAUGGCCCAA---GUGGCCAGAUGG-GCGAGUGUCGUGGGCAAAGUCCCAUGAAAGCCGCUUA ----.....................((((((.....---..----(((...((.(((..(((((...---..)))))..)))-))..)))(((((((......)))))))..)))))).. ( -37.90) >DroSec_CAF1 12004 104 + 1 ----CUCCAUUCGGUUUCCCCUUCCAGUGGCAAAG----CA----CACAUAGCUCCACAUGGCCCAA---GUGGCCAGAUGG-GCGAGUGUCGUGGGCAAAGUCCCAUGAAAGCCGCUUA ----........((.........))((((((....----..----(((...((.(((..(((((...---..)))))..)))-))..)))(((((((......)))))))..)))))).. ( -38.30) >DroSim_CAF1 13249 105 + 1 ----CUCCAUUCCGUUUCCCCUUCCAGUGGCAGAG----CA----CACAUAGCUCCACAUGGCCCAA---GUGGCCAGAUGGGGCGAGUGUCGUGGGCAAAGUCCCAUGAAAGCCGCUUA ----.....................((((((....----..----(((...((((((..(((((...---..)))))..))))))..)))(((((((......)))))))..)))))).. ( -42.00) >DroEre_CAF1 11704 116 + 1 CCAGCUCCAUUCCGUUUCCCCUUCCAGUGGCUAAACAGGCAAACGUACAUAGCUCCACAUGGCCCAA---GUGGCCAGAUGG-GCGAGAGUCGUGGGCAAAGUCCCAUGAAAGCCGCUUA ..(((........((((..((.......))..)))).(((...........((.(((..(((((...---..)))))..)))-)).....(((((((......)))))))..)))))).. ( -37.70) >DroYak_CAF1 12273 110 + 1 --AGCUCCAAUCCGUUUCCCCUUCCAGUGGCCAAACAGACA----CACAUAGCUCCACAUGGCCCAA---GUGGCCAGAUGG-GCGAGAGUCGUGGGCAAAGUCCCAUGAAAGCCGCUUA --.......................((((((..........----......((.(((..(((((...---..)))))..)))-)).....(((((((......)))))))..)))))).. ( -34.70) >DroAna_CAF1 13463 99 + 1 ----CUCCAUUCUACUUCCC-UUCUCGUUUCCGACUCG-CC----AGUAUAGCUCCAGAUGGGCCCAGAAAUGGCCA-----------AGUCAAAGGCACAGUUGCAUGAAAGCCGCUUA ----...............(-((.((((...(((((.(-((----((.....))...(((.((((.(....))))).-----------.)))...)))..))))).)))))))....... ( -18.20) >consensus ____CUCCAUUCCGUUUCCCCUUCCAGUGGCAAAGC___CA____CACAUAGCUCCACAUGGCCCAA___GUGGCCAGAUGG_GCGAGAGUCGUGGGCAAAGUCCCAUGAAAGCCGCUUA ..........................(((((....................((.(((..(((((........)))))..))).)).....(((((((......)))))))..)))))... (-26.19 = -27.75 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:21 2006