Locus 2227

Sequence ID 2R_DroMel_CAF1
Location 8,213,365 – 8,213,463
Length 98
Max. P 0.716590
window3668

overview

Window 8

Location 8,213,365 – 8,213,463
Length 98
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 81.90
Mean single sequence MFE -19.78
Consensus MFE -12.30
Energy contribution -12.46
Covariance contribution 0.16
Combinations/Pair 1.19
Mean z-score -1.97
Structure conservation index 0.62
SVM decision value 0.39
SVM RNA-class probability 0.716590
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8213365 98 + 20766785
ACUCUGCCCAUAUCCUAUUGUUACUACUUUUAUUCAGAAACUCUUUUUUGAACUGAAAAGCAGAUUGGA------------GAUCUCUCUCUC--UAUGAAAGUGACACACU
..................(((((((.(((((.((((((((....))))))))...))))).....((((------------((......))))--))....))))))).... ( -18.60)
>DroSec_CAF1 8769 100 + 1
ACUCUGCACAUAUCCUAUUGUUACUACUUUCAUUCAGAAACUCUUUUUUGAACUGAAAAGCAGAUUUGA------------GAUGUCUCUCUCUUUAUGAAAGUGACAUACU
..((((((((........)))......(((((((((((((....)))))))).))))).))))).....------------.(((((.((.((.....)).)).)))))... ( -22.80)
>DroSim_CAF1 8682 98 + 1
ACUCUGCACAUAUCCUAUUGUUACUACUUUCAUUCAGAAACUCUUUUUUGAACUGAAAAGCAGAUUGGA------------GAUGUCUCUCUC--UAUGAAAGUGACACACU
..((((((((........)))......(((((((((((((....)))))))).))))).))))).((((------------((......))))--))....((((...)))) ( -20.60)
>DroEre_CAF1 8730 110 + 1
ACUCUGCACAUAUUUUAUUGUUACUACUUUCAGUCGGAAACUCCUUUCUGAAUUGAAAAGCAGAUUGCAAGCGUUGAAAUUGAAAUCUCUCUU--UUUGAAAAUGACACACU
..((((((((........)))......(((((((((((((....)))))).))))))).)))))......(.((((...(..(((.......)--))..)...)))).)... ( -18.80)
>DroYak_CAF1 8713 108 + 1
ACUCUGCACAUAUUCUAUUGUUACUACUUUCAUUCGCAAACUCUUUUCUAAGCUGAAAAGCAGAUUGGUAGCGUUGAAACAGAAAUCUCCCU----CUGAAAAUGACACACU
..................(((((....(((((..(((.....((..(((..(((....))))))..))..))).)))))((((........)----)))....))))).... ( -18.10)
>consensus
ACUCUGCACAUAUCCUAUUGUUACUACUUUCAUUCAGAAACUCUUUUUUGAACUGAAAAGCAGAUUGGA____________GAUAUCUCUCUC__UAUGAAAGUGACACACU
..((((((((........)))......(((((((((((((....)))))))).))))).)))))................................................ (-12.30 = -12.46 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:20 2006