| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,209,388 – 8,209,488 |
| Length | 100 |
| Max. P | 0.549538 |
| Location | 8,209,388 – 8,209,488 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 78.56 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -12.85 |
| Energy contribution | -13.60 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8209388 100 - 20766785 --GUCGGUUAAUGCAAGAGCCGGCACAGUGUAUGCAAAUGAGUUUCCAAUGACUUGCCACAACGAAAGCAAGGCAAA--AACAAAACAAAACGGCACGCAGCAA --(((((((........)))))))....((..(((....(((((......)))))(((....(....)...)))...--..............)))..)).... ( -24.00) >DroSec_CAF1 4894 95 - 1 --GUCGGUUAAUGCAA--GCCGGCACAGUGUAUGCAAAUGAGUUUCCAAUGACUUGCCA---CGAAAGCGAGGCAAA--AACAAAACAAAACAGCACGCAGCAA --(((((((......)--))))))....((..(((....(((((......)))))(((.---((....)).)))...--..............)))..)).... ( -25.10) >DroSim_CAF1 4838 95 - 1 --GUCGGUUAAUGCAA--GCCGGCACAGUGUAUGCAAAUGAGUUUCCAAUGACUUGCCA---CGAAAGCAAGGCAAA--AACAAAACAAAACAGCACGCAGCAA --(((((((......)--))))))....((..(((....(((((......)))))(((.---(....)...)))...--..............)))..)).... ( -24.30) >DroWil_CAF1 7363 85 - 1 GCGUCAGUUAAUGUCA--G--AGCAAUGUGUAUGCAAAUGAGUUUCCAAUGACUUGGUC---CGAAAACAAAAAG--GCAACCAAACGA----ACGCG------ ((((..(((...((((--.--.(((.......)))...((......)).)))).(((((---(...........)--)..)))))))..----)))).------ ( -16.30) >consensus __GUCGGUUAAUGCAA__GCCGGCACAGUGUAUGCAAAUGAGUUUCCAAUGACUUGCCA___CGAAAGCAAGGCAAA__AACAAAACAAAACAGCACGCAGCAA ..((((((..........))))))...((((........(((((......)))))(((....(....)...)))...................))))....... (-12.85 = -13.60 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:16 2006