Locus 2224

Sequence ID 2R_DroMel_CAF1
Location 8,205,559 – 8,205,673
Length 114
Max. P 0.922237
window3663

overview

Window 3

Location 8,205,559 – 8,205,673
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 75.73
Mean single sequence MFE -35.50
Consensus MFE -24.57
Energy contribution -22.80
Covariance contribution -1.77
Combinations/Pair 1.50
Mean z-score -1.56
Structure conservation index 0.69
SVM decision value 1.15
SVM RNA-class probability 0.922237
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8205559 114 - 20766785
GAGAAUCCGCUUGGCUAGAAUCAAGAAAUGGUUCUUCAUCCUACUGCCCCUGAUGGUUAUUUAUCUGCUUUGGCUAUGCAGUGACACCUUUUCUUGGUGGCUAAGUGCCCUGGG
.......(((((((((...(((((((((.(((...((((..((..(((...(((((....)))))......)))..))..)))).))).))))))))))))))))))....... ( -32.50)
>DroPse_CAF1 3158 114 - 1
GCAGAUACGCUUGGCCAAAGUCCAACGAUGGCUGCUCGUUUUGCUACCACUGUUUUUGGUUUGUCUGCUUUGGUUGUACUGCGACACCUUCGCCUGGUGGGCGAGUGCUUUCGG
(((((((.....(((((((....((((.(((..((.......))..))).))))))))))))))))))..(((..(((((((..((((.......)))).)).)))))..))). ( -37.30)
>DroSec_CAF1 860 114 - 1
GAGAAUCCGUUUGGCUAGAAUCAAGAAAUGGUGCUUCAUCCUAUUGCCGCUGGUGUUUAUUUAUCUGCUUUGGCUAUGUAGUGACACCUUUUCUUGGUGGCUAAGUGCUCUGGG
(((....(((((((((...(((((((((.((((..((((..(((.(((((.((((......)))).))...))).)))..)))))))).))))))))))))))))))))).... ( -34.50)
>DroEre_CAF1 858 114 - 1
GAGAAUGCACUUGGCUAAAAUUAAGAAAUGGUGCUUCAUUCUACUGCCCCUGCUGGUUAUUUCUCUGCUUUGGCUAUGUUGUGACACCUUUUCUUGGUGGUUAAGUGCCUUGGG
......((((((((((...(((((((((.((((..((((..((..(((...((.((......))..))...)))..))..)))))))).)))))))))))))))))))...... ( -36.00)
>DroYak_CAF1 852 114 - 1
GAGAAUUCACUUGGCCAGAAUCAAGAAGUGGUGCUUCAUUCUACUGCCCUUGGUGGUUAUUUCUCUGCUCUGGCUAUAUAAUGACACCUUUUCUUGGUGGUUAAGUGCCUUGGG
.......((((((((((...((((((((.((((..(((((.((..(((...((..(........)..))..)))..)).))))))))).))))))))))))))))))....... ( -38.00)
>DroPer_CAF1 2790 114 - 1
GCAGAUACGCUUGGCCAAAGUCCAACGAUGGCUGCUCCUUUUGCUACCACUGUUUUUGGUUUUUUUGCUUUGGUUGUACUGCGACACCUUCGCCUGGUGGGCGAGUGCUUUCGG
((((.((((....((((((((((((((.(((..((.......))..))).)))...))).......))))))))))))))))(.(((..(((((.....)))))))))...... ( -34.71)
>consensus
GAGAAUACGCUUGGCCAAAAUCAAGAAAUGGUGCUUCAUUCUACUGCCCCUGGUGGUUAUUUAUCUGCUUUGGCUAUACAGUGACACCUUUUCUUGGUGGCUAAGUGCCUUGGG
.......((((((((((...((((((((.(((...((((..((..(((.......................)))..))..)))).))).))))))))))))))))))....... (-24.57 = -22.80 +  -1.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:15 2006