Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,205,118 – 8,205,237 |
Length | 119 |
Max. P | 0.735698 |
Location | 8,205,118 – 8,205,237 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.30 |
Mean single sequence MFE | -39.89 |
Consensus MFE | -16.19 |
Energy contribution | -15.87 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.50 |
Mean z-score | -2.24 |
Structure conservation index | 0.41 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8205118 119 + 20766785 CUUAUCCAGAGCCGCCUCUAGGUUAAAAAGUUUCCUCAGCAACAGAUUGCUGGAAACAUCACAAGGUUCACUGGUUAGCCACUGAGGUGACUUCUUCUCUAUUUGCUCUAGGAGACUAA ....((((((((((((((..((((((..(((..(((((((((....))))))((....))...)))...)))..))))))...))))))...............))))).)))...... ( -35.46) >DroGri_CAF1 403 119 + 1 CUUCUGCAGUGCAGCAUCCAAGUUGAACAGUUGCCUCAACAGCAGAUUGCUGGACACAUCGCAGGGUUCACUUGCAAGCAGAUCGGGCGCCUUCUCCAGGAUGCGCACCAGUAAACUAU ..(((((.((.(((((((...(((((.........)))))....)).))))).)).....(((((.....)))))..)))))..((((((.(((....))).)))).)).......... ( -39.90) >DroSec_CAF1 419 119 + 1 CUUAUCCAGAGCCGCCUCUAGGUUGAAUAGUUUCCUCAGCAACAGAUUGCUGGCAACAUCACAAGGUUCACUGGCUAGCCACUGAGGUGACUUUUUCUCGAUUUGCUUUAGGAGACGAA .(((.((((((....)))).)).)))...(((((((((((((....))))))((((.(((.......(((.(((....))).)))(....)........)))))))...)))))))... ( -32.80) >DroEre_CAF1 418 119 + 1 CUUAUCUAGAGCCGCCUCUAGGUUGAAUAGUUUUCUGAGCAAGAGAUUGCUGGAAACAUCACAAGGCUCACUGGCUAGCCACUGAGGUGACUUCCUCUUUAUAUGCUCGAGGAGACUAA ...((((((((....))))))))....((((((((((((((((((.....((....))((((....((((.(((....))).))))))))....)))).....))))).))))))))). ( -40.10) >DroYak_CAF1 412 119 + 1 CUUAUCGAGAGCCGCCUCUAGGUUGAAUAGUUUCCUCAGCAAGAGAUUGCUGGAAACAUCGCAAGGUUCACUGGCUAGCCACUGAGGUGACUUCUUUGCUAUAUGCUCCAGGAGUUUAG ............((((((..(((((....((((((..(((((....)))))))))))...((.((.....)).)))))))...))))))((((((..((.....))...)))))).... ( -36.40) >DroMoj_CAF1 406 119 + 1 CUUCUGCAGAGCAGCAUCCAAAUUGAAGAGUUGUCGCAGCAUCAGAUUGCUGGAGACGUCGCAGGGCUCGCUGGAGAGCAGCUCUGGUGCCCUCUCCAGCAAUCGCUGCAGCAACUGGU (((((((......)))........))))((((((.(((((....((((((((((((.(.(((((((((.(((....))))))))).))).).))))))))))))))))).))))))... ( -54.70) >consensus CUUAUCCAGAGCCGCCUCUAGGUUGAAUAGUUUCCUCAGCAACAGAUUGCUGGAAACAUCACAAGGUUCACUGGCUAGCCACUGAGGUGACUUCUUCUCUAUUUGCUCCAGGAGACUAA ....(((.((((.................(((...(((((((....))))))).))).((((....((((.(((....))).))))))))..............))))..)))...... (-16.19 = -15.87 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:14 2006