Locus 2221

Sequence ID 2R_DroMel_CAF1
Location 8,195,637 – 8,195,734
Length 97
Max. P 0.911687
window3660

overview

Window 0

Location 8,195,637 – 8,195,734
Length 97
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 83.76
Mean single sequence MFE -36.55
Consensus MFE -24.29
Energy contribution -26.73
Covariance contribution 2.44
Combinations/Pair 1.21
Mean z-score -2.35
Structure conservation index 0.66
SVM decision value 1.08
SVM RNA-class probability 0.911687
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8195637 97 + 20766785
CUGAGUUUCAUGGCGGG-GGAGACACUACCACUUCCAAUGGUGGUAGUUCUCUCAGAAAAGAGACGGUGAUGACGUUGCUGGGGGCUCGUCUAACCCA
....(((((.(..(..(-(((((.(((((((((......))))))))))))))).)..).)))))(((...((((..((.....)).))))..))).. ( -38.50)
>DroSec_CAF1 20431 97 + 1
CAGAGUUUCAAGGCGGG-GGAGACACUACCACUUCCAAUGGUGGUAGUUCUCUCCCAAAAGAGAGGGUGAUGACGUUGCCGGGGGCCCGUCUAAACCA
..............(((-(((((.(((((((((......))))))))))))))))).........(((...((((..(((...))).))))...))). ( -41.20)
>DroSim_CAF1 19834 97 + 1
CAGAGUUUCAAGGCGGG-GGGGACACUACCACUUCCAAUGGUGGUAGUUCUCUCUCAAAAGAGAGGGUGAUGACGUUGCCGGGGGCCCGUCUAAGCCA
..(.((((..(((((((-((.((((((((((((......))))))))).(((((((....))))))).......))).)).....)))))))))))). ( -39.90)
>DroYak_CAF1 19918 88 + 1
CAGAGUUCCAAGGGGGGGGGAGAAAA----------AACUGUGGUAGUAUUCUCCCAAAAGAGAGGCUGAUGACGUUGCUGGGGGCCCGUCUAGGCCA
.....((((....))))(((((((..----------.((((...)))).)))))))........((((...((((..((.....)).))))..)))). ( -26.60)
>consensus
CAGAGUUUCAAGGCGGG_GGAGACACUACCACUUCCAAUGGUGGUAGUUCUCUCCCAAAAGAGAGGGUGAUGACGUUGCCGGGGGCCCGUCUAAGCCA
..............(((.(((((.(((((((((......)))))))))))))))))........((((...((((..(((...))).))))..)))). (-24.29 = -26.73 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:12 2006