Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,168,776 – 8,168,878 |
Length | 102 |
Max. P | 0.700340 |
Location | 8,168,776 – 8,168,878 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.64 |
Mean single sequence MFE | -28.48 |
Consensus MFE | -21.96 |
Energy contribution | -21.44 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.70 |
Structure conservation index | 0.77 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8168776 102 - 20766785 UCGCUCUGUGGAAUGCUCCAAUCGUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGGGCGUACUUGCAAAUAUGCUUUAAAUAUACAUUGGCGAUUU-UUUAUA (((((..(((..(((((((((.((((((.((((......)))).))))))))).))))))....(((....)))..........))).)))))...-...... ( -32.60) >DroSec_CAF1 1412 103 - 1 UCGCUCUGUGGAAUGCUCCAAUCCUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGGACGUAUUUGCAAAUAUACUUUAAAUAUACAUUGGCGAUUUUUUUAUA (((((..(((.((((((((((((((....)))).........))))))))))......((((........))))..........))).))))).......... ( -24.40) >DroSim_CAF1 1414 103 - 1 UCGCUCUGUGGAAUGCUCCAAUCCUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGAGCGUACUUGCAAAUAUGCUUUAAAUAUACAUUGGCGAUUUUUUUAUA (((((..(((.((((((((((((((....)))).........)))))))))).((((((((........)))))))).......))).))))).......... ( -29.70) >DroEre_CAF1 1437 103 - 1 UCGCUCUGUGGAAUGCCCCAAUCGUUCAUGGGGCCACAAUCCUUGGAGCGUCGAGGGCUUACUUGGAAUUGUACUCUAAAUAUACAUUGGCGAUUUUUUUAUA ..((((((.(((..((((((........)))))).....))).))))))(((((..(..((.(((((.......))))).))..).)))))............ ( -29.30) >DroYak_CAF1 1418 102 - 1 UCGCUCUGUGGAAUGCCCCAAUCGUUCCUGGGGCCACAAUCCUUGGACCGUCGAGGACUUACUUGGAAAUGUACUUUAAAAAAACAUUGGCGAUUU-UUUAUA (((((..(((....((((((........)))))).....(((((((....)))))))...........................))).)))))...-...... ( -26.40) >consensus UCGCUCUGUGGAAUGCUCCAAUCGUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGGGCGUACUUGCAAAUAUACUUUAAAUAUACAUUGGCGAUUUUUUUAUA (((((..(((....((((((........)))))).....(((((((....)))))))...........................))).))))).......... (-21.96 = -21.44 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:06 2006