| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,165,113 – 8,165,213 |
| Length | 100 |
| Max. P | 0.592128 |
| Location | 8,165,113 – 8,165,213 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 77.73 |
| Mean single sequence MFE | -27.25 |
| Consensus MFE | -11.53 |
| Energy contribution | -12.62 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8165113 100 + 20766785 UUUUACAGUUG---GCCCCCUCCUAACAAUCACUUAGUGCUGCCUUGGAGGCUUUUCUUUUAGACG-------GAGCUUAGCGAUUGACUUGUUUCAAGUAGCCAGCUCC ......(((((---((..........(((((.((.(((.(((.((..((((....))))..)).))-------).))).)).)))))(((((...))))).))))))).. ( -28.60) >DroSec_CAF1 12271 100 + 1 UUUUACAGGCA---GCCCCCUCCUAACAAUCACUUAGUGCUGCCUUGGAGGCUUCUCUUUUAGACG-------GAGCUUAGUGAUUGACUUGUUUCAAGUAGCCAGCUCC .......(((.---............((((((((.(((.(((.((.((((....))))...)).))-------).))).))))))))(((((...))))).)))...... ( -29.00) >DroSim_CAF1 13276 103 + 1 UUUCACAGGCAGUAGCCCCCUCCUAACAAUCACUUAGUGCUGCCUUGGAGGCUUCUCUUUUAGACG-------GAGCUUAGUGAUUGACUUGUUUCAAGUAGCCAGCUCC .......(((................((((((((.(((.(((.((.((((....))))...)).))-------).))).))))))))(((((...))))).)))...... ( -29.00) >DroEre_CAF1 12082 90 + 1 GUUUACAUGCC---A-CCCCUCCCAACAAUCACUAAGUGCUGCCUUGGAGGCUUCUCUCCUAGACA-------GAGUUUAGUGAUUGACUUGUUUCAAGUA--------- ...........---.-..........(((((((((((..(((.((.(((((....))))).)).))-------)..)))))))))))(((((...))))).--------- ( -28.10) >DroYak_CAF1 12175 99 + 1 UUUUACAUGCC---G-CCCCUCCCAACAAUCACUUAGUGCUGCCUUGGAGGCUUCUCUUUUAGACA-------GAGUUUAGUGAUUGACUUGUUUCAAGUAGCCAGCUCC ........((.---(-(.........((((((((.((..(((.((.((((....))))...)).))-------)..)).))))))))(((((...))))).))..))... ( -23.00) >DroAna_CAF1 12014 89 + 1 UGU-CC---UG---GCCCCCUUUCAUCAAUUACUUAGU-----------GGCUUCUCUUUUGGACAGAUCAUGGAGUUUAGUGAUUGACUUGUUUC---UGGCCAAGGCA .((-(.---((---(((......(((((((((((....-----------((((((...(((....)))....)))))).)))))))))..))....---.))))).))). ( -25.80) >consensus UUUUACAGGCA___GCCCCCUCCCAACAAUCACUUAGUGCUGCCUUGGAGGCUUCUCUUUUAGACA_______GAGCUUAGUGAUUGACUUGUUUCAAGUAGCCAGCUCC ..........................((((((((....((((((.....))).(((.....)))..........)))..))))))))(((((...))))).......... (-11.53 = -12.62 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:05 2006