Locus 2215

Sequence ID 2R_DroMel_CAF1
Location 8,153,437 – 8,153,539
Length 102
Max. P 0.530949
window3649

overview

Window 9

Location 8,153,437 – 8,153,539
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 83.51
Mean single sequence MFE -24.88
Consensus MFE -17.69
Energy contribution -17.83
Covariance contribution 0.14
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.530949
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8153437 102 + 20766785
UGAAAUGGGUCUAGGAAAGACCCUGCAGACCAUAUCUCUGCUGGGUUACCUCAAGCAUUUCAAGUGAGUUUUCAUAAACAUCUAUUGUUUUAAAGAAAUCUC
(((((((.....(((...(((((.(((((.......))))).))))).)))....)))))))...(((.((((..(((((.....)))))....)))).))) ( -28.50)
>DroSec_CAF1 481 100 + 1
UGAAAUGGGUCUAGGAAAGACCCUGCAGACCAUAUCCCUGCUGGGUUACCUUAAGCAUUUCAAGUGAGU--UCAUAAACAUCUAGUGUUUAAAAGAAAUGUC
(((((((.....(((...(((((.((((.........)))).))))).)))....))))))).......--...(((((((...)))))))........... ( -24.50)
>DroSim_CAF1 478 100 + 1
UGAAAUGGGUCUAGGAAAGACCCUGCAGACCAUAUCCCUGCUGGGUUACCUUAAGCAUUUCAAGUGAGU--UCAUAAACAUCUAGUGUUUAAAAGAAAUGUC
(((((((.....(((...(((((.((((.........)))).))))).)))....))))))).......--...(((((((...)))))))........... ( -24.50)
>DroEre_CAF1 475 102 + 1
UGAAAUGGGUCUGGGAAAGACCCUGCAGACCAUAUCCCUGCUGGGUUAUCUUAAGCAUUUUAAGUGGGUUUUAAUAAACAUUAAGUGCUUUAAUGAAAACUC
......((((((.....)))))).((((.........)))).(((((.((..((((((((..((((..(......)..))))))))))))....)).))))) ( -27.50)
>DroYak_CAF1 477 102 + 1
UGAAAUGGGUCUCGGUAAGACCCUGCAGACCAUAUCCCUGCUGGGUUACCUCAAACAUUUUAAGUGGGUAUUAAAAAACAUUAAGUGCUUUAAGGACAACAC
(((((((..(...((((..((((.((((.........)))).))))))))..)..))))))).((..((.(((((..((.....))..)))))..)).)).. ( -23.50)
>DroAna_CAF1 505 96 + 1
UGAAAUGGGUCUGGGCAAGACCCUACAAACUAUUUCCCUGCUGGGAUACCUCAAGCAUUUCAAGUAAGUCU-----AAUAUC-AGUUUUGAAAGGAUAACAU
......((((((.....))))))...........(((.(((((((....))).))))(((((((.......-----......-...))))))))))...... ( -20.79)
>consensus
UGAAAUGGGUCUAGGAAAGACCCUGCAGACCAUAUCCCUGCUGGGUUACCUCAAGCAUUUCAAGUGAGU_UUCAUAAACAUCUAGUGUUUAAAAGAAAACUC
(((((((.....(((...(((((.((((.........)))).))))).)))....)))))))........................................ (-17.69 = -17.83 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:01 2006