Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,152,507 – 8,152,614 |
Length | 107 |
Max. P | 0.855724 |
Location | 8,152,507 – 8,152,614 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.54 |
Mean single sequence MFE | -36.35 |
Consensus MFE | -22.49 |
Energy contribution | -23.38 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.62 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8152507 107 - 20766785 UCUGCGCGUGCUAUCGCUAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA-CAAAUCGAGAAUACGAACUAUCGAUAGUUUUGAUG-G---------- ..(((((((..((((((........)))))).)))))))..(((.(((((.((.......)).))))).))-)...(((......))).(((((((.....))))))-)---------- ( -38.00) >DroSec_CAF1 4439 107 - 1 UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGGGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA-CAGUUCGAGAACACGAACUAUCGAUAGUUUUGAUA-G---------- ..(((.(((..(((((((......))))))).))).)))..(((.(((((.((.......)).))))).))-).(((((......)))))((((((.....))))))-.---------- ( -36.50) >DroSim_CAF1 2969 116 - 1 UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA-CAGUUCGAGAGCACGAAAUAUCGAUAGUUUUGAUA-GGCUA-GGUUA ..(((((((..(((((((......))))))).)))))))((.((((((((.((.((....)).)).))...-...((((......)))).((((((.....))))))-)))))-).)). ( -38.40) >DroEre_CAF1 2885 107 - 1 ACUGCGCGUGCUAUCGGAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCGGCGGCACCAUAAGUGGUGCCAAA-UAGAUCGCGAAUGUGGACUAUCGAUAGUUUUGAUA-G---------- .(..((((((..(((....))))))))........(((((.((.....))(((((((....)))))))...-....)))))...)..).(((((((.....))))))-)---------- ( -37.90) >DroYak_CAF1 2888 107 - 1 UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGAAAGUGGCGGCAAA-UAGCUCGAGAAAAUCAACUAUCGAUAGUUUUAAUA-G---------- (((((((((..(((((((......))))))).))))))((.((((..(((.((.((....)).)).)))..-)))))).))).....(((((....)))))......-.---------- ( -37.50) >DroAna_CAF1 2683 111 - 1 ACUGCGCGUGCUAUCGGCAGCAUAAACGAUUAACGCGUGAAGUUGGCUGCAGUACUUUUGGUGGCGGGAAAGCAGCUGGUG--------UUAUCGAAACUUUAAAUGUGGCUGUGCUUA ...((((((...((((..........))))..)))))).((((((((..((....(((((((((((((.......))..))--------))))))))).......))..)))).)))). ( -29.80) >consensus UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA_CAGAUCGAGAACACGAACUAUCGAUAGUUUUGAUA_G__________ ..(((((((..((((((........)))))).)))))))......(((((.((.......)).)))))......................((((((.....))))))............ (-22.49 = -23.38 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:00 2006