Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,141,556 – 8,141,657 |
Length | 101 |
Max. P | 0.975113 |
Location | 8,141,556 – 8,141,657 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -15.52 |
Energy contribution | -15.58 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.20 |
Mean z-score | -2.29 |
Structure conservation index | 0.66 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.975113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8141556 101 + 20766785 AUUAAAA-------------------GAGUGAACUAAGUGUAAGGUAAUGGGAAGAGAUAAACAAAUUCUCUUAAAAAUCGCUCUUAGUGACUUGAGUAGGGCGAAUUAAGUAAGCUCAG .......-------------------((((..(((.(((.............((((((.........)))))).....(((((((.............)))))))))).)))..)))).. ( -21.42) >DroSec_CAF1 27989 100 + 1 AUUUAAA-------------------GAGUCAACCAAGUACAAGGGAAUGGGAAAAGAUAAA-AAAUUCUCUUAAAAAUCGCUCUUAGUGACUUGAGUAGGGCGAAUUAAGUAAGCUCAG .......-------------------((((..((.......((((((((.............-..)))))))).....(((((((.............))))))).....))..)))).. ( -19.68) >DroSim_CAF1 18845 100 + 1 AUUAAAA-------------------GAGUCAACCAAGUACAAGAGAAUGGGAAAAGAUAAA-AAAUUCUCUUAAAAAUCGCUCUUAGUGACUUGAGUAGGGCGAAUUAAGUAAGUUCAG .......-------------------..(((.(((((((..((((((((.............-..))))))))......(((.....)))))))).))..)))(((((.....))))).. ( -18.76) >DroEre_CAF1 17772 119 + 1 AUUAAAGAGGUUUCCACUGUAUAAAGCAGUGGAGUCAGUAUAAGAGAAUUCGAAAAUGUUAC-AAAUUCUCUUAGAAACUGCUUUUAGUGAUUUGAGUAGGGCGGAUUAAGUAAGCUCAG ......(((.((((((((((.....))))))))(((....((((((((((.(.........)-.))))))))))....((((((..(....)..))))))))).........)).))).. ( -33.60) >consensus AUUAAAA___________________GAGUCAACCAAGUACAAGAGAAUGGGAAAAGAUAAA_AAAUUCUCUUAAAAAUCGCUCUUAGUGACUUGAGUAGGGCGAAUUAAGUAAGCUCAG ..........................((((..(((.(((..((((((((................)))))))).....(((((((.............)))))))))).)))..)))).. (-15.52 = -15.58 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:57 2006