| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,141,089 – 8,141,188 |
| Length | 99 |
| Max. P | 0.510098 |
| Location | 8,141,089 – 8,141,188 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 60.60 |
| Mean single sequence MFE | -17.97 |
| Consensus MFE | -9.01 |
| Energy contribution | -12.35 |
| Covariance contribution | 3.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8141089 99 - 20766785 UGUUCUCCGUAUCUAAAAAUGAAAUAAAUAACUUAAUUAGAUGGGAUUUGUAACGUAUUAUUUAGCUUUUUGUUAGGCUGUACGUUACUGCAUUUACAU--------------------- .....(((.(((((((....................))))))))))...(((((((((..((((((.....))))))..)))))))))...........--------------------- ( -21.35) >DroSim_CAF1 18316 116 - 1 UGUUCUCCGUAUCUAAAAAUAAAAUAAAUAACUUAAUUAGAUGGGAUUUGUAACGUAUUAUUUAGCUACUUGUUAAGCUGUACGUUACU----UUACAUAAUAUGCAAUAGCAAAUUGAA .....(((.(((((((....................))))))))))...(((((((((..((((((.....))))))..))))))))).----.....((((.(((....))).)))).. ( -25.05) >DroYak_CAF1 27979 76 - 1 UAUUUUCCGUAUCUAAAAAUAAAA--AUGAUCUUUAUUACGUGGGGCUUAUAAGUCAUUACUUAGCUUUUAAUUAGAC------------------------------------------ ...........(((((.((((((.--......))))))..((((((((....)))).))))...........))))).------------------------------------------ ( -7.50) >consensus UGUUCUCCGUAUCUAAAAAUAAAAUAAAUAACUUAAUUAGAUGGGAUUUGUAACGUAUUAUUUAGCUUUUUGUUAGGCUGUACGUUACU____UUACAU_____________________ .....(((.(((((((....................))))))))))...(((((((((..((((((.....))))))..)))))))))................................ ( -9.01 = -12.35 + 3.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:56 2006