Locus 2209

Sequence ID 2R_DroMel_CAF1
Location 8,136,560 – 8,136,670
Length 110
Max. P 0.819149
window3641

overview

Window 1

Location 8,136,560 – 8,136,670
Length 110
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 78.71
Mean single sequence MFE -31.30
Consensus MFE -19.32
Energy contribution -17.66
Covariance contribution -1.66
Combinations/Pair 1.46
Mean z-score -1.82
Structure conservation index 0.62
SVM decision value 0.67
SVM RNA-class probability 0.819149
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8136560 110 + 20766785
UAGUUGUUUGCUUAUUUUAUAGAUCU---UAAUGUA---UGCAACAAGGGACUCGCUU-UGGCGGCUAGCC-AAAACGGCGAUGUCUGGCCAAGUGGGUUCAGUGUUUUGUUUUUGUU
..(((((.((((((............---))).)))---.)))))...((((((((((-.((((((..(((-.....)))...)))..)))))))))))))................. ( -31.80)
>DroPse_CAF1 16059 104 + 1
UAAUCGUUUGC-UAUUUUAUAGAUCUAAUUAAUGUA---UGCAACGGCGGACGCACUU--GCCGGCCGAUC-CCAC------AGGCUG-CCAGGGGCGUUCGCAGUUUUGUUUUUGUU
....((((.((-(((.(((..........))).)))---.))))))((((((((.(((--(.(((((....-....------.)))))-.)))).))))))))............... ( -33.00)
>DroSim_CAF1 13734 110 + 1
UAGUUGUUUGCUUAUUUUAUAGAUCU---UAAUGUA---UGCAACAAGGGACUCGCUUUUGGCGGCUAGCC-AAAACGGCGAGGUCUG-CCGAGCGGGUCCAGUGUUUUGUUUUUGUU
..(((((.((((((............---))).)))---.)))))...((((((((((..(((((((.(((-.....)))..)).)))-))))))))))))................. ( -38.10)
>DroEre_CAF1 13878 109 + 1
UAGUUGUUUGCUUAUUUUAUAGAUCU---UAAUGUA---UGCAACAAGGGACUCGCUU--AGCGGCUAUCCCCAAUCGGCGAUGUCAG-CCAAGUGGGUCCAGUGUUUUGUUUUUGUU
..(((((.((((((............---))).)))---.)))))...((((((((((--.(((((.(((.((....)).)))))).)-).))))))))))................. ( -31.80)
>DroYak_CAF1 23346 108 + 1
UAGUUGUUUGCUUAUUUUAUAGAUCU---UAAUGUA---UGCAACAAGGGACUCGCUU--UGCGGCUAUCC-AAAACGGCAAAGUCAG-CCAAGUGGGUCCAGUGUUUUGUUUUUGUU
..(((((.((((((............---))).)))---.)))))...((((((((((--.((((((..((-.....))...)))).)-).))))))))))................. ( -29.60)
>DroAna_CAF1 12895 101 + 1
UAGUUGUUUGCUUAUUUUAUAGAUCU----AAUGUAUAAUGCAACAGUGGAGGCACUU--AGCGGAGGCCC-G----------UCCUGGCCAGGUGUGUCCAAUGUUUUGUUUUUGUU
..(((((.....(((.(((......)----)).)))....)))))..((((.((((((--......((((.-.----------....)))))))))).))))................ ( -23.50)
>consensus
UAGUUGUUUGCUUAUUUUAUAGAUCU___UAAUGUA___UGCAACAAGGGACUCGCUU__GGCGGCUAGCC_AAAACGGCGAAGUCUG_CCAAGUGGGUCCAGUGUUUUGUUUUUGUU
...(((((.((......((((...........))))....))))))).((((((((((.....(((.................))).....))))))))))................. (-19.32 = -17.66 +  -1.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:53 2006