Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,135,482 – 8,135,580 |
Length | 98 |
Max. P | 0.670751 |
Location | 8,135,482 – 8,135,580 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -18.12 |
Consensus MFE | -13.78 |
Energy contribution | -13.78 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.57 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8135482 98 - 20766785 ----------------------AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGGUACCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACAAAA ----------------------.....(((....(((....((((((((...((((((...)))))).............(((.....))).....))))))))..)))..)))...... ( -16.30) >DroSec_CAF1 21936 98 - 1 ----------------------AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACACCA ----------------------.....(((....(((....((((((((...((((((...)))))).............(((.....))).....))))))))..)))..)))...... ( -16.30) >DroSim_CAF1 12661 98 - 1 ----------------------AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACACCA ----------------------.....(((....(((....((((((((...((((((...)))))).............(((.....))).....))))))))..)))..)))...... ( -16.30) >DroEre_CAF1 12783 120 - 1 UUGAAUCCGAAAUAAACUGGCGAUUUAUUCAAAUCUAACCAAAAACUAUAUCGGUUGGUUCCCAAUCAUUUCUGGCUACUGUCUUUUUGACUUUCAAGGGUUUUCCUUUUCGAAACGCUA ........(((((....(((.(((((....)))))...)))...........((((((...)))))))))))((((....(((.....)))(((((((((....)))))..)))).)))) ( -20.30) >DroYak_CAF1 22247 119 - 1 UUAAAUCCGAAAUA-GCUGGCCAUUUGUUCAAAACUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCAACUGUCUUUUUGACUCCCAAGGGGUUUCCUUUUCGAAACGCUU .......(((((..-((..((((((((............)))).........((((((...)))))).....))))....))..))))).......(((.(((((......))))).))) ( -21.40) >consensus ______________________AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACACCA .........................................((((((((...((((((...)))))).............(((.....))).....))))))))................ (-13.78 = -13.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:52 2006