Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,134,964 – 8,135,084 |
Length | 120 |
Max. P | 0.731573 |
Location | 8,134,964 – 8,135,084 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.28 |
Mean single sequence MFE | -26.78 |
Consensus MFE | -24.96 |
Energy contribution | -25.02 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.12 |
Structure conservation index | 0.93 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8134964 120 + 20766785 GUCUAGAUACGGAAAAUAUAAGGUUUGUGUUUGCAGCUGUUAAGGACACAAUUCUGCAAUCGAACCUUAAGGAAUAUAAUUUGGUCUAAACUGGAUUUGGAUCGAAAAACUAUUUUUGUG .......((((((((...(((((((((...((((((.(((.......)))...)))))).)))))))))..........(((((((((((.....)))))))))))......)))))))) ( -30.60) >DroVir_CAF1 30536 120 + 1 CUUUAGAUACUGAAAAUAUAAGGUUUGUGUUUGCAGCUGUAAAGGAUACAAUUCUGCAAUCCAAUCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGAAAACUAUUUUUGUG .......(((.(((((((......((((((((((((.((((.....))))...))))))(((........)))))))))(((((((((((.....)))))))))))....)))))))))) ( -25.10) >DroWil_CAF1 32046 120 + 1 UUCUAGAUACUGAAAACAUAAGGUUUGUGUUUGCUGCUGUAAAGGACACAAUUCUGCAAUCAAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUAGAUCGGAUAACUAUUUUUGUG ..................(((((((((...((((...(((.......))).....)))).)))))))))(((((((..((((((((((((.....))))))))))))...)))))))... ( -25.90) >DroMoj_CAF1 13675 120 + 1 CUAUAGAUACUGAAAAUAUAAGGUUUGUGUUUGCAGCUGUAAAGGACACGAUUCUGCAAUCCAAUCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGAAAACUAUUUUUGUG .......(((.(((((((......((((((((((((..((...(....).)).))))))(((........)))))))))(((((((((((.....)))))))))))....)))))))))) ( -23.10) >DroAna_CAF1 11206 120 + 1 GUUUAGAUACGGAAAAUAUUAGGUUUGUGUUUGCAGCUGUUAAGGACACGAUCCUGCAAUCGAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGCAAACUAUUUUUGUG .......((((((((.....(((((((...((((((.((((...)))).....)))))).))))))).............((((((((((.....)))))))))).......)))))))) ( -25.90) >DroPer_CAF1 14549 120 + 1 GUUUAGAUACUGAAAACAUAAGGUUUGUGUUUGCAGCUGUUAAGGACACCAUUCUGCAAUCGAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGACCAGUAAACUAUUUUUGUG (((((...........(.(((((((((...((((((.((((...)))).....)))))).))))))))).).........((((((((((.....))))))))))))))).......... ( -30.10) >consensus GUUUAGAUACUGAAAAUAUAAGGUUUGUGUUUGCAGCUGUAAAGGACACAAUUCUGCAAUCGAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGAAAACUAUUUUUGUG ..................(((((((((...((((((.(((.......)))...)))))).)))))))))(((((((...(((((((((((.....)))))))))))....)))))))... (-24.96 = -25.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:51 2006