Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,133,347 – 8,133,465 |
Length | 118 |
Max. P | 0.768287 |
Location | 8,133,347 – 8,133,465 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.38 |
Mean single sequence MFE | -34.44 |
Consensus MFE | -24.20 |
Energy contribution | -23.78 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.21 |
Mean z-score | -1.62 |
Structure conservation index | 0.70 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768287 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8133347 118 + 20766785 AUUUA--UCUAAUUUAGCUACUUGAGCGAUCUAGCUCGAAUUGAACAGGCUGAUUACUUGCCAACCGAGCAGGAUAUUCUGCGUGCUCGAGUGCCGACAACUGGCAUUCUUGAGUAUCCA .....--.........(((..((((((......))))))........(((.........))).....))).((((((((.(....)..((((((((.....))))))))..)))))))). ( -35.40) >DroPse_CAF1 12553 120 + 1 AUUCCUUCCUUACUUAGCUACUUAAGCGACAUAGAUCGCAUUUCACAGCCCGACUACCUGGCCACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACCACUGGCAUACUAGAGUAUCCA ............(((((........((((......))))........(((.(.....).)))..)))))..((((((((((.......((((((((.....)))))))))))))))))). ( -33.81) >DroEre_CAF1 10630 118 + 1 AUUUA--UCUAAUUUAGCUACUUGAGCGAUCUGGCUCGAAUUGAACAGGCUGAUUACUUGCCAACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACAACUGGCAUUCUUGAGUAUCCA .....--.........(((..((((((......))))))........(((.........))).....))).((((((((.(((....)))((((((.....))))))....)))))))). ( -33.30) >DroWil_CAF1 30320 120 + 1 ACUCUUUCCCAUAUUAGCUAUCUAAGCGAUCUAGAGCGUAUAGAGCAAGCUGAUUAUUUGCCAACAGAGCAGGAUAUUUUGCGUGCCCGUGUGCCAACAACUGGCAUUCUUGAGUACCCA .((((....((.(((((((.((((.(((........))).))))...)))))))....)).....))))..((.(((((.(.(((((..(((....)))...))))).)..))))).)). ( -29.40) >DroAna_CAF1 9648 112 + 1 AUCCC--------UCAGCUAUCUGAGCGACCUGGCUCGUAUUGAGCAGGCUGACUACUUGCCCACCGAGCAGGACAUUCUGCGUGCUCGAGUGCCGACCACCGGCAUUCUUGAGUAUCCA .((.(--------((((....))))).))((((.((((...((.(((((.......))))).)).)))))))).......(.((((((((((((((.....))))))))..)))))).). ( -41.90) >DroPer_CAF1 12678 120 + 1 AUUCCUUCCUUACUUAGCUACUUAAGCGACAUAGAGCGCAUUUCACAGCCCGACUACCUGGCCACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACCACUGGCAUUCUAGAGUACCCA ..........(((((.(((.....)))......((((((...(((..(((.(.....).)))...)))(((((....)))))))))))(.((((((.....)))))).)..))))).... ( -32.80) >consensus AUUCC__CCUAACUUAGCUACUUAAGCGACCUAGAUCGAAUUGAACAGGCUGACUACUUGCCAACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACAACUGGCAUUCUUGAGUAUCCA ................(((.....)))....................(((.........)))......(((((....)))))(((((((.((((((.....))))))...)))))))... (-24.20 = -23.78 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:50 2006