| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,132,534 – 8,132,647 |
| Length | 113 |
| Max. P | 0.521408 |
| Location | 8,132,534 – 8,132,647 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.75 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8132534 113 + 20766785 CAUCAAGCUGGUUUUUCAGAACAUAUUCAUGGCCAUGCAGUCAAUGAUCAAGGCCAUGGAUAUGCUGAAGAUUUCCUACGGCCAGGGAGAGCAUAGUGUAAGUGAAACAUUGA-- ......(((...(((((((..(((((((((((((.((((.....))..)).))))))))))))))))))))((((((......))))))))).((((((.......)))))).-- ( -36.60) >DroVir_CAF1 28003 111 + 1 CAUUAAGCUGGUGUUCCAAAAUAUAUUCAUGGCCAUGCAGUCCAUGAUCAAAGCCAUGGAUAUGCUCAAAAUAUCAUAUGGUGUUGGCGAGCAUAAUGUGAGUAC--CAUUCA-- ........((((((((((....(((((((((((((((.....))))......)))))))))))((((..((((((....))))))...))))....)).))))))--))....-- ( -32.90) >DroGri_CAF1 10204 111 + 1 CAUUAAACUGGUUUUCCAAAACAUAUUCAUGGCCAUGCAGUCCAUGAUCAAAGCCAUGGAUAUGCUCAAAAUAUCAUAUGGUGUUGGCGAGCAUAACGUAAGUAU--UAUUAA-- ........(((....)))....(((((((((((((((.....))))......)))))))))))((((..((((((....))))))...))))...((....))..--......-- ( -27.90) >DroWil_CAF1 29495 115 + 1 CAUAAAAUUGGUCUUUCAAAAUAUUUUUAUGGCUAUGCAGUCUAUGAUAAAGGCCAUGGACAUGCUUAAAAUAUCCUAUGGAGUAGGCGAACACAGCGUAAGUUCUACACAAAAG (((((((((((....)))).....)))))))(((((((.(((((((........))))))).((((((.....(((...))).))))))......)))).)))............ ( -24.00) >DroMoj_CAF1 11207 111 + 1 CAUUAAGCUGGUGUUCCAAAAUAUAUUCAUGGCCAUGCAGUCAAUGAUCAAAGCCAUGGAUAUGCUCAAAAUAUCAUACGGCGUUGGCGAGCAUAAUGUAAGUAU--UAUCAG-- (((((.(((((((((......((((((((((((....((.....))......)))))))))))).....)))))).....((....)).))).))))).......--......-- ( -25.40) >DroAna_CAF1 8890 109 + 1 CAUCAAGCUGGUCUUUCAGAACAUAUUCAUGGCCAUGCAGUCCAUGAUCAAGGCAAUGGAUAUGCUAAAGAUAUCCUAUGGCGUGGGAGAGCAUAGCGUAAGUUCUU----AA-- ......((((..(((((...((((((((((.(((.((((.....))..)).))).))))))))((((.((.....)).))))))..)))))..))))..........----..-- ( -27.80) >consensus CAUUAAGCUGGUCUUCCAAAACAUAUUCAUGGCCAUGCAGUCCAUGAUCAAAGCCAUGGAUAUGCUCAAAAUAUCAUAUGGCGUUGGCGAGCAUAACGUAAGUAC__CAUUAA__ ......(((.((.........((((((((((((....((.....))......))))))))))))..........((........)))).)))....................... (-15.58 = -15.75 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:48 2006