Locus 2203

Sequence ID 2R_DroMel_CAF1
Location 8,128,794 – 8,128,907
Length 113
Max. P 0.542453
window3634

overview

Window 4

Location 8,128,794 – 8,128,907
Length 113
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.75
Mean single sequence MFE -27.95
Consensus MFE -17.81
Energy contribution -19.77
Covariance contribution 1.96
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.542453
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8128794 113 + 20766785
AGUUUCGAGCAAGAUCCCCGUCAAACGGACUCCCCGCCAGCCAGCGGUCGCCAUCCGCAGCCGCCUGGCAGCCACCCGAAAAAGUCCC-CCCCUCGACAAAAAAAAAAUUUAGC
..(((((.((.......(((.....))).......(((((...(((((.((.....)).)))))))))).))....)))))..(((..-......)))................ ( -28.60)
>DroPse_CAF1 7313 91 + 1
--UUUCGCCAAAAAUCCGU-------GGACACACCGACAGCCAG-----GCAACCAGCAAUCGAAUCG---UCUCC-----UGGUCUC-CGUCUCGACACCACAAUUGGCAGUC
--....(((((......(.-------.(((....(((..((..(-----....)..))..)))....)---))..)-----((((.((-......)).))))...))))).... ( -21.60)
>DroSec_CAF1 15101 113 + 1
AGUUUCGAGCAAGAUCCCCGUCAAACGGACUCCCCGCCAGCCAGCGGUCGCCAUCCGCAGCCGCCUGGCAGCCACCCGAAAAAGUCCC-CCCCUCGACAAAAAAAAAAUUUAGC
..(((((.((.......(((.....))).......(((((...(((((.((.....)).)))))))))).))....)))))..(((..-......)))................ ( -28.60)
>DroSim_CAF1 5956 113 + 1
AGUUUCGAGCAAGAUCCCCGUCAAACGGACUCCCCGCCAGCCAGCGGUCGCCAUCCGCAGCCGCCUGGCAGCCACCCGAAAAAGUCCC-CCCCUCGACAAAAAAAAAAUUUAGC
..(((((.((.......(((.....))).......(((((...(((((.((.....)).)))))))))).))....)))))..(((..-......)))................ ( -28.60)
>DroEre_CAF1 5964 113 + 1
AGUUUCGAGCAAGUUACCCGUCAAACGGACUACCCGCCAGCCAGGGGUCGCCAUCCGCGGCCGCCUGGCAGCCACCCGAAAAAGUCCCCCCCCUCGACAAAAA-AAAUUUUAGC
....(((((...(((........)))(((((....((..((((((((((((.....)))))).)))))).))(....)....))))).....)))))......-.......... ( -34.30)
>DroYak_CAF1 15451 111 + 1
AGUUUCGAGCAAGAUCCCCGUCAAACGGACUCCCCGCCAGCCAGCGGUCGCCAUCCGCAGCCGCCUGGUAGCCACCCGAAAAAAUCCC-CCCCUCGACAAAA--AAAUUUUAUC
....(((((........(((.....))).......((..(((((((((.((.....)).)))).))))).))................-...))))).....--.......... ( -26.00)
>consensus
AGUUUCGAGCAAGAUCCCCGUCAAACGGACUCCCCGCCAGCCAGCGGUCGCCAUCCGCAGCCGCCUGGCAGCCACCCGAAAAAGUCCC_CCCCUCGACAAAAAAAAAAUUUAGC
....(((((........(((.....))).......(((((...(((((.((.....)).)))))))))).......................)))))................. (-17.81 = -19.77 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:46 2006