Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,125,639 – 8,125,733 |
Length | 94 |
Max. P | 0.725915 |
Location | 8,125,639 – 8,125,733 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 82.18 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -15.27 |
Energy contribution | -16.75 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.17 |
Mean z-score | -1.86 |
Structure conservation index | 0.71 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8125639 94 - 20766785 UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG---UAUCUGUAUUCG ....((.(((.(((((((.(((.....((....((((((((((.........)))))))))).))...)))..))))....)---))...))).)). ( -23.60) >DroPse_CAF1 2834 88 - 1 UUAGCAUUAUUAACGGUUUGUCUAUGAACUAAU------UGCCUACUGAUCUGAUUGCUGACUGUACUUGUACUUGUAUUUG---UAACGGUAUCUG .(((((.......((((..((..((......))------.))..)))).......)))))(((((((..(((....)))..)---).)))))..... ( -14.04) >DroSec_CAF1 11938 88 - 1 UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG---UAU------UUG (((((((((........((........))(((.((((((((((.........)))))))))).))).)))))))))......---...------... ( -22.40) >DroSim_CAF1 2802 94 - 1 UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG---UAUUUGUAUUUG (((((((((........((........))(((.((((((((((.........)))))))))).))).)))))))))......---............ ( -22.40) >DroEre_CAF1 2943 88 - 1 UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAU---------CUGUAUCUG ...((((.((..(..(((.(((.....((....((((((((((.........)))))))))).))...)))..)))..)---------..)))))). ( -23.30) >DroYak_CAF1 12351 97 - 1 UUAAGAUUGUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUUUUUUAUCUGUAUCUG ...((((.......((((.(((.....((....((((((((((.........)))))))))).))...)))..)))).........))))....... ( -22.49) >consensus UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG___UAUCUGUAUCUG (((((((((........((........))(((.((((((((((.........)))))))))).))).)))))))))..................... (-15.27 = -16.75 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:43 2006