| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,120,327 – 8,120,431 |
| Length | 104 |
| Max. P | 0.637204 |
| Location | 8,120,327 – 8,120,431 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 86.89 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -21.36 |
| Energy contribution | -21.48 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8120327 104 - 20766785 GCGGGUGAUCCCGACCACAGCCCAAAAAUGGGUCACAAAAACUUAAAGUUGAGGCCAAUAAACGUGUAACCACGAAAAGGUUAUUUGGCUAAUCCAAAGAUUCG ..(((....)))((((...((((((...(((((.......)))))...))).))).......((((....))))....)))).(((((.....)))))...... ( -23.50) >DroSim_CAF1 38454 97 - 1 GCGGGGGAUCCCGACCACAGCCCAAAAAUGGGUCAAAAAAACUUAAAGUUGCGGCCAAUAAACGUGUAACUACAAAAAGGUUAUUCGGCUAAUCCAU------- (((((....)))((((...(((((....))))).............(((((((.(........)))))))).......)))).....))........------- ( -20.90) >DroEre_CAF1 35895 97 - 1 GCGGGGGAUCCCGACCACAGCCCAAAAAUGGGUCAAAAGAUCUGAAAGUUUAGGCCAAUAAUAGUGUAACCACGAAAAGGUUAUUUGGCUAAUCCAU------- ..((((((((..((((.((.........))))))....))))).........((((((.......((((((.......))))))))))))..)))..------- ( -24.01) >consensus GCGGGGGAUCCCGACCACAGCCCAAAAAUGGGUCAAAAAAACUUAAAGUUGAGGCCAAUAAACGUGUAACCACGAAAAGGUUAUUUGGCUAAUCCAU_______ .((((....))))......(((((....)))))...................((((((.......((((((.......)))))))))))).............. (-21.36 = -21.48 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:39 2006