| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,119,737 – 8,119,835 |
| Length | 98 |
| Max. P | 0.527007 |
| Location | 8,119,737 – 8,119,835 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 97.28 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -22.35 |
| Energy contribution | -22.13 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.94 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8119737 98 - 20766785 CUAAUGAAAUGAAAUGAAACGGAACGUUCAGCGAAGUGCAAACAAACAAAAGUUAAGUGCACAUCGGUGGGGGAAAUGUGGGGCAUGUUCGUUCGCAU ...(((.(((((((((..(((...(.((((.(((.(((((....(((....)))...))))).))).)))).)...)))....))).))))))..))) ( -24.00) >DroSim_CAF1 37876 98 - 1 CUAAUGAAAUGAAAUGAAACGGAACGUUCAGCGAAGUGCAAACAAACAAAAGUUAAGUGCACAUCGGUGGGGGAAAUGUGGGGCAUGUUCGCUCGCAU ........................(.((((.(((.(((((....(((....)))...))))).))).)))).)..(((((((.(......)))))))) ( -23.40) >DroEre_CAF1 35275 98 - 1 CUAAUGAAAUGAAAUGAAACGAGACGUUCAGCGAAGUGCAAACAAACAAAAGUUAAGUGCACAUCGGUGGGGGAAAUGUGGGGCAUGUUCACUCGCAU ........................(.((((.(((.(((((....(((....)))...))))).))).)))).)..(((((((.........))))))) ( -23.70) >consensus CUAAUGAAAUGAAAUGAAACGGAACGUUCAGCGAAGUGCAAACAAACAAAAGUUAAGUGCACAUCGGUGGGGGAAAUGUGGGGCAUGUUCGCUCGCAU ........................(.((((.(((.(((((....(((....)))...))))).))).)))).)..(((((((.........))))))) (-22.35 = -22.13 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:38 2006