| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,113,797 – 8,113,891 |
| Length | 94 |
| Max. P | 0.959855 |
| Location | 8,113,797 – 8,113,891 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 76.61 |
| Mean single sequence MFE | -7.87 |
| Consensus MFE | -6.90 |
| Energy contribution | -6.90 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.959855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8113797 94 - 20766785 UCCCAUGCCUUGGCAGUCGCCUUAUUUUUCCGAUUUUUUC-------CCCUAUUUUUUUUUCUUUCUUUCUAUUUUUUUACUGCACCUCAAAGUAGAACAA ...........(((....)))...................-------....................(((((((((.............)))))))))... ( -7.82) >DroSim_CAF1 31950 100 - 1 UCCCAUGCCUUGGCAGUCGCCUUAUUUUUUAUAUUUUUUCAGAUUUUUCCCCUUUUUUUAUAUUUUUUUCUAUUU-UUUACUGCACCUCAAAGUAGAACAA ...........(((....)))..............................................((((((((-(............)))))))))... ( -7.90) >DroEre_CAF1 29235 73 - 1 UCCCAUGCCUUGGCAGUCGCCUUAUUUUUCCUAUUUU---------------------------UUUUUCUAUUU-UUUACUGCACCUCAAAGUAGAACAA ...........(((....)))................---------------------------...((((((((-(............)))))))))... ( -7.90) >consensus UCCCAUGCCUUGGCAGUCGCCUUAUUUUUCCUAUUUUUUC________CC__UUUUUUU_U_UUUUUUUCUAUUU_UUUACUGCACCUCAAAGUAGAACAA ...........(((....)))...........................................................((((........))))..... ( -6.90 = -6.90 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:37 2006