| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,112,466 – 8,112,564 |
| Length | 98 |
| Max. P | 0.537557 |
| Location | 8,112,466 – 8,112,564 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.17 |
| Mean single sequence MFE | -15.76 |
| Consensus MFE | -11.52 |
| Energy contribution | -12.76 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8112466 98 + 20766785 UCAAAAGUACUGACCACAGAUAGCUACUACUUCAAUAGCUCUAUU-AAUCGACCGUGAAGCAAUCUAAAAGUCAGAGGAAAAUACUCAAUAAAGAUAGA .........(((((...((((.(((......(((...(.((....-....)).).)))))).))))....)))))........................ ( -12.00) >DroSec_CAF1 27471 94 + 1 UCAAAAGUACUGACCACAGAUAGCUGCUACUUCAAUAGCUUUAUU-AAUCGAGCGUGAAGCAAUCUAAAAGUCAGA----AAUACUCAAUAAAGAUACA .....(((((((((...((((...((((...(((...((((....-....)))).)))))))))))....))))).----..))))............. ( -16.60) >DroSim_CAF1 30702 94 + 1 UCAAAAGUACUGACCACAGAUAGCUGCUACUUCAAUAGCUCUAUU-AAUCGAGCGUGAAGCAAUCUAAAAGUCAGA----AAUACUCAAUAAAGAUACA .....(((((((((...((((...((((...(((...((((....-....)))).)))))))))))....))))).----..))))............. ( -19.00) >DroEre_CAF1 27948 88 + 1 UCAAAAGUACUGACCACAGAUAGCUACCA-UUCAAUAGCUCUAUUAAAUCGAGCGUGAAGCAAUCUACAA----------GAUACCAAAUAAAGAUACA ......(((((......((((.(((....-.(((...((((.........)))).)))))).))))...)----------).))).............. ( -12.00) >DroYak_CAF1 27775 98 + 1 UCAAAAGUACUGACCACAGAUAGAUUCAA-UUCAAUAGCUCUAUUUAAUCGAGCGUGAAGCAAUCUACAAGUCAGAGGCAGAUAUCAAAUAAAGAUACU ......((.(((((....(.((((((...-((((...((((.........)))).))))..)))))))..)))))..))...((((.......)))).. ( -19.20) >consensus UCAAAAGUACUGACCACAGAUAGCUACUACUUCAAUAGCUCUAUU_AAUCGAGCGUGAAGCAAUCUAAAAGUCAGA____AAUACUCAAUAAAGAUACA .........(((((...((((.(((......(((...((((.........)))).)))))).))))....)))))........................ (-11.52 = -12.76 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:36 2006