Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,111,609 – 8,111,699 |
Length | 90 |
Max. P | 0.728078 |
Location | 8,111,609 – 8,111,699 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.30 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -14.36 |
Energy contribution | -14.20 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.42 |
Mean z-score | -2.15 |
Structure conservation index | 0.49 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8111609 90 - 20766785 AAAAAUAGACAAAUGGCCAGG-GAGCGAGAA---------------GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUU------UCCCCAUUG--CUCCUCCCAU ............((((...((-((((((...---------------.....(((.(.....)..)))(((.((((.((.....))))------))))).)))--))))).)))) ( -28.30) >DroPse_CAF1 28281 81 - 1 AAAAAUAGCCAAAGAGCGAGGCGAGCUAUUG---------------CUAAAGCUAG---AGCAGUGCGGGCGAAAUGUUGUGUUGUU------UC---AUUU--GUCUU----U .......(((.....(((..((.((((....---------------....))))..---.))..))).)))((((((......))))------))---....--.....----. ( -19.50) >DroSec_CAF1 26601 90 - 1 AAAAAUAGACAAAUGGCCAGG-GAGCGAGAA---------------GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUU------UCCCCAUUG--CUCCUCCCAU ............((((...((-((((((...---------------.....(((.(.....)..)))(((.((((.((.....))))------))))).)))--))))).)))) ( -28.30) >DroSim_CAF1 29854 90 - 1 AAAAAUAGACAAAUGGCCAGG-GAGCGAGAA---------------GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCCGUGUGCCU------UCCCCAUUG--CUCCUCCCAU ............((((...((-((((((...---------------(((..((.......))(((((((((.....))).)))))))------))....)))--))))).)))) ( -31.30) >DroEre_CAF1 27001 89 - 1 AAAAAUAGACAAAUAGCCAGG-GAGCGAGU----------------GAAAUGUGGGAAAAGCGGCGCGGGCGAUAUGUUGUGCGCUU------UCCCCAUUG--CUCCUCCCAU ...................((-(((.((((----------------..((((.((((((.(((.(((((........))))))))))------)))))))))--)))))))).. ( -34.30) >DroYak_CAF1 26817 113 - 1 AAAAAUAGACAAAUAGCCAGG-GAGCGAGAAAAGUGGGAAAAGCUAGAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUUUCCCUUUCCCCAUUGCGCUCCACCCAU ....................(-(((((.....((((((....(((.....)))((((((((((.(((((........)))))))))))...)))))))))).))))))...... ( -34.40) >consensus AAAAAUAGACAAAUAGCCAGG_GAGCGAGAA_______________GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUU______UCCCCAUUG__CUCCUCCCAU ...................((.(((.(((......................((.......))(((((((((.....))).))))))..................)))))))).. (-14.36 = -14.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:35 2006