Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,102,815 – 8,102,918 |
Length | 103 |
Max. P | 0.902830 |
Location | 8,102,815 – 8,102,918 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.89 |
Mean single sequence MFE | -24.33 |
Consensus MFE | -12.80 |
Energy contribution | -12.97 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.25 |
Mean z-score | -2.44 |
Structure conservation index | 0.53 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8102815 103 - 20766785 CGUUUGCUGCU---GCUGUUACCUCUGACUCUUCUUCUUCUUAUUCUUGUAAGUUG---UAGAUACAGAACAUGUACCAGCAGCUCUCACACA----CCA-CCCGCCCGCCCCC .((.((..(((---((((.(((.((((.....(((....(((((....)))))...---.)))..))))....))).)))))))...)).)).----...-............. ( -23.30) >DroSec_CAF1 17798 107 - 1 CGUUUGCUGCUGCUGCUGCUACCUCUGACUCUUCUUCUUCUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUGCUCACAAA----CCAACCCGCCCUCCCCC .(((((..((.(((((((.(((.((((.....(((....(((((....)))))...---.)))..))))....))).)))))))))...))))----)................ ( -26.00) >DroSim_CAF1 20673 107 - 1 CGUUUGCUGCUGCUGCUGCUACCUCUGACUCUUCUUCUUCUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUGCUCACAAA----CCAACCCGCCCUCCCCC .(((((..((.(((((((.(((.((((.....(((....(((((....)))))...---.)))..))))....))).)))))))))...))))----)................ ( -26.00) >DroEre_CAF1 17890 98 - 1 CGUUUGCUGCU---GCUGCUACCUCUGACUCUU------CUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUACUGACACA----ACAACCCGCCCGCCCCC .((((((((((---(.(((....((((..(((.------(((((....)))))...---.)))..))))....))).))))))))..)))...----................. ( -24.10) >DroYak_CAF1 17842 102 - 1 CGUUUGCUGCU---GCUGUUACCUCUGACUCUU------CUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUACUCAUACCCCAUACCACCCGCCCGGCCCC .((.((.((((---((((.(((.((((..(((.------(((((....)))))...---.)))..))))....))).))))))))..)).))..........((....)).... ( -22.00) >DroPer_CAF1 18085 97 - 1 GGAUUGCUGCA---GCCUUUGCCUUUGCCUUUG-----CCUGGCUCUUGUAAGCUGUAGUAGAUACAGAAUGUAUACCAGCAAGCCCCGCU---------CCCUCCCCUCCCCC ((.((((((((---((..((((....(((....-----...)))....))))))))))))))((((.....)))).))(((.......)))---------.............. ( -24.60) >consensus CGUUUGCUGCU___GCUGCUACCUCUGACUCUU_____UCUUAUUCUUGUAAGUUG___UAGAUACAGAAUAUGUACCAGCAGUACUCACACA____CCAACCCGCCCGCCCCC .....((((((...((.......((((..(((.......(((((....))))).......)))..))))....))...)))))).............................. (-12.80 = -12.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:33 2006