Locus 2190

Sequence ID 2R_DroMel_CAF1
Location 8,091,479 – 8,091,569
Length 90
Max. P 0.874150
window3616

overview

Window 6

Location 8,091,479 – 8,091,569
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 93.56
Mean single sequence MFE -18.18
Consensus MFE -16.24
Energy contribution -16.88
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.89
SVM decision value 0.88
SVM RNA-class probability 0.874150
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8091479 90 - 20766785
UUGCAUAAAUUUUAGAAUUAAUUUUACGACGGCAGCGUCCUGUUUUAUUGAUGCGCUUUUAGAAUUAAGAUAUAAAGUUUAUACGCCUAG
..((((((((((((...(((((((((....(((.(((((..........))))))))..)))))))))....))))))))))..)).... ( -19.20)
>DroSec_CAF1 6471 90 - 1
UUGCAUAAAUUUUAGAAUUAAUUUUACGACGGCAGCGUCCUGUUUUAUUGAUGCGCUUUUAGAAUUAAGAUAUAAAGUUUAUAUGCCUAG
..((((((((((((...(((((((((....(((.(((((..........))))))))..)))))))))....)))))))..))))).... ( -19.90)
>DroSim_CAF1 6623 90 - 1
UUGCAUAAAUUUUAGAAUUAAUUUUACGACGGCAGCGUCCUGUUUUAUUGAUGCGCUUUUAGAAUUAAGAUAUAAAGUUUAUAUGCCUAG
..((((((((((((...(((((((((....(((.(((((..........))))))))..)))))))))....)))))))..))))).... ( -19.90)
>DroEre_CAF1 6700 90 - 1
UUGCAUAAAUUUUAGAAUUAAUUUUACCACGGCAGCGUCCUGUUUUAUUGAUGCGCUUUUAGAAUUAAGAACUAAAGUCUAUAAGUCUAG
....(((.(((((((..(((((((((....(((.(((((..........))))))))..)))))))))...))))))).)))........ ( -17.40)
>DroYak_CAF1 6623 90 - 1
UUGCAUAACUUUUAAAAUUAAUUUUACCACGGCAGCGUCCUGUUUUAUUGAUGCGCUUUUAGAAUUAGGAACUAAAGUCUAAAACUCUAG
.......(((((.....(((((((((....(((.(((((..........))))))))..))))))))).....)))))............ ( -14.50)
>consensus
UUGCAUAAAUUUUAGAAUUAAUUUUACGACGGCAGCGUCCUGUUUUAUUGAUGCGCUUUUAGAAUUAAGAUAUAAAGUUUAUAAGCCUAG
....((((((((((...(((((((((....(((.(((((..........))))))))..)))))))))....))))))))))........ (-16.24 = -16.88 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:29 2006