Locus 219

Sequence ID 2R_DroMel_CAF1
Location 1,557,436 – 1,557,556
Length 120
Max. P 0.510741
window491

overview

Window 1

Location 1,557,436 – 1,557,556
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -36.27
Consensus MFE -31.58
Energy contribution -32.70
Covariance contribution 1.12
Combinations/Pair 1.06
Mean z-score -1.35
Structure conservation index 0.87
SVM decision value -0.04
SVM RNA-class probability 0.510741
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1557436 120 - 20766785
GAAGGCCAUCUCCCGACCCUUGAGUUCGAAGUCAAGAUCAGCGAAGAUGAUUGCCACAACGGUGUGUUUCUACUUGGUGGUCUUGGCCAUUCUCAUGGCCUUCCUGUCUCCCACAGCAGA
((((((((((....))....((((......((((((((((.((((((....((((.....))))....)))..))).))))))))))....))))))))))))((((........)))). ( -39.40)
>DroSec_CAF1 7242 120 - 1
GAAGGCCAUCUCCCGACCCUUGAGUUCGUAGCCAAGAUCAGCGAAGAUGAUUGCCACAACGGUGUGUUUUUACCUGGUGGUCUUGGCCAUUCUCAUGGCCUUCCUGUCCCCCACCGCAGA
((((((((((....))....((((...((.((((((((((.(..((.(((..(((((....))).))..))).))).)))))))))).)).))))))))))))((((........)))). ( -41.20)
>DroEre_CAF1 7669 119 - 1
GA-GGCCAACUCUCGACCCUUGAGUUCGAAGCCAAGAUCAGCGAAGAUGAUUGCCACAACGGUGUGUUUUUACUUGGUGCUCCUGGCCAUCCUCAUGGCCUUCCUAUCUCCCACUGCAGA
((-(((((((((.........)))).....((((.((...((.(((.(((..(((((....))).))..)))))).))..)).))))........))))))).................. ( -30.30)
>DroYak_CAF1 13809 120 - 1
GAAGGCCAUAUCUCGACCCUUGAGUUCUAAGCCAAGAUCAGCAAAAAUGAUUGCCACAACGGUGUGUUUUUACUUGGUGGUCUUAGCCAUUCUCAUGGCCUUCCUAUCUCCCACAGCAGA
(((((((((..(((((...)))))......((.(((((((.(((...(((..(((((....))).))..))).))).))))))).)).......)))))))))................. ( -34.20)
>consensus
GAAGGCCAUCUCCCGACCCUUGAGUUCGAAGCCAAGAUCAGCGAAGAUGAUUGCCACAACGGUGUGUUUUUACUUGGUGGUCUUGGCCAUUCUCAUGGCCUUCCUAUCUCCCACAGCAGA
((((((((............((((......((((((((((.(((...(((..(((((....))).))..))).))).))))))))))....))))))))))))................. (-31.58 = -32.70 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:47 2006