Locus 2188

Sequence ID 2R_DroMel_CAF1
Location 8,084,255 – 8,084,361
Length 106
Max. P 0.549769
window3614

overview

Window 4

Location 8,084,255 – 8,084,361
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 84.78
Mean single sequence MFE -25.24
Consensus MFE -20.19
Energy contribution -21.58
Covariance contribution 1.39
Combinations/Pair 1.22
Mean z-score -1.64
Structure conservation index 0.80
SVM decision value 0.03
SVM RNA-class probability 0.549769
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8084255 106 + 20766785
AAAGAACUUAGAAAUUCUAAUUGAUAUGUAUGCUACAGAUAUCCAUGGCUGUUUGUUCGAUGUUGUACCAACUGGCCACACGUCCAGUGGAUCAGCAAAAGGUUCA
...((((((..........(((((.......((((..(....)..)))).......)))))((((..(((.((((.(....).)))))))..))))...)))))). ( -24.04)
>DroSec_CAF1 1995 106 + 1
AAAGAACUUAAAAAUUCUAAUUGAUAUGUAUGUUACAGAUAUCCAUGGCUGUUUGUUCCAUGUUGUACCAACUGGCUACACGUCCAGUGGAGCAGCAAAAGGUUCA
...((((((....................(((..(((((((.(....).)))))))..)))(((((.(((.(((((.....).))))))).)))))...)))))). ( -29.40)
>DroSim_CAF1 1992 106 + 1
AAAGAACUUAAAAAUUCUAAUUAAUAUGUAUGUUACAGAUAUCCAUGGCUGUUUGUUCCAUGUUGUACCAACUGGCUACACGACCAGUGGAGCAGCAAAAGGUUCA
...((((((....................(((..(((((((.(....).)))))))..)))(((((.(((.((((........))))))).)))))...)))))). ( -29.50)
>DroEre_CAF1 1965 106 + 1
AAAGAAGAUAGAAAUUCUAACUGAUAUCUAUUUUGCAGAUAUCUAUGGCAGUUUGUUCCAUGUUAUACCAACUGGCCACUCGUCCAGUGGAGCAGCAAAAGGUUCA
....((((((((...((.....))..))))))))...((.((((...((....((((((.((......))(((((.(....).)))))))))))))...)))))). ( -22.20)
>DroYak_CAF1 1991 106 + 1
AAAGAACAUAGCAAUUCCAACUGAUAUGUAUUUUGCAGAUAUCCAUGGCAGUUUGUUCCAUGUUGUACCAACUGGCCACUCGUCCGGUGGAGCAGCAAAAGGUUCA
...((((..(((((..(((...(((((.(.......).)))))..)))....)))))...((((((.(((.((((.(....).))))))).))))))....)))). ( -25.90)
>DroAna_CAF1 2129 97 + 1
AGUAAUCCCUAAAAUU-UCAUUA--------CUUUCAGAUAUCCAUGGCUGUCUGUUCCAUGCUCUACCAACUGGCCACACGACCAGUGGAACAGCAAAAGGUCCA
.......(((......-......--------....((((((.(....).)))))).....((((...(((.((((........)))))))...))))..))).... ( -20.40)
>consensus
AAAGAACUUAAAAAUUCUAAUUGAUAUGUAUGUUACAGAUAUCCAUGGCUGUUUGUUCCAUGUUGUACCAACUGGCCACACGUCCAGUGGAGCAGCAAAAGGUUCA
...((((((.........................(((((((.(....).)))))))....((((((.(((.((((........))))))).))))))..)))))). (-20.19 = -21.58 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:27 2006