Locus 2184

Sequence ID 2R_DroMel_CAF1
Location 8,075,035 – 8,075,132
Length 97
Max. P 0.591011
window3608

overview

Window 8

Location 8,075,035 – 8,075,132
Length 97
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.36
Mean single sequence MFE -29.40
Consensus MFE -19.28
Energy contribution -18.67
Covariance contribution -0.61
Combinations/Pair 1.32
Mean z-score -1.79
Structure conservation index 0.66
SVM decision value 0.12
SVM RNA-class probability 0.591011
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8075035 97 - 20766785
CGAAUGCAAAAUCAUUUCCGCUUCACU------GAGGAGAUGAAGUCAUUAGGCAAUGG------GCUAACUAUGCAAACAGGGUU-------AAUCUCUGC---UAAUUGCUGACUAA
...........((((((((.(......------).))))))))((((((((((((.(((------.....))))))...(((((..-------...))))))---)))....))))).. ( -25.40)
>DroSec_CAF1 39978 97 - 1
CGAAAGCAAAAUCAUUUCCGCUUCGCU------GAGGAGAUGAAGUCGUUAGGCGAUGG------GCUAACUAUGCAAACAGGGUU-------AAUCUCUGC---UAAUUGCUGACUAA
...........((((((((.(......------).))))))))(((((((((.(....)------.)))))...((((.(((((..-------...))))).---...)))).)))).. ( -28.20)
>DroSim_CAF1 22441 97 - 1
CGAAAGCUAAAUCAUUUCCGCUUCGCU------GAGGAGAUGAAGUCGUUAGGCGAUGG------GCUAACUAUGCAAACAGGGUU-------AAUCUCUGC---UAAUUGCUGACUAA
...........((((((((.(......------).))))))))(((((((((.(....)------.)))))...((((.(((((..-------...))))).---...)))).)))).. ( -28.20)
>DroEre_CAF1 38479 97 - 1
CGAAAGCAAAAUCAUUUCCGCUUCGCU------GAGGAGAUGAAGUCGUUAGGCGAUUG------GCCAACUACGCAAACAGGGUU-------AAUCUCUGC---UAAUUGCUGACUAA
...........((((((((.(......------).))))))))(((((((.(((.....------))))))...((((.(((((..-------...))))).---...)))).)))).. ( -28.00)
>DroYak_CAF1 38381 97 - 1
CGAAAGCAAAGUCAUUUCCGCUUCGCU------GAGGAGGUGAAGCCGUUAGGCGAUUG------GCUAUCUAUGCAAACAGGGUU-------AAUCUCUGC---UAAUUGCUGACUAA
.........((((......((((((((------.....)))))))).....((((((((------((.......))...(((((..-------...))))).---)))))))))))).. ( -28.70)
>DroAna_CAF1 38932 119 - 1
UGAAAGCCAAAUCAUUUCCGCUUGGUUGAGGUUGAGGAAAUGAAGCCAUCAGAUGAUGGCUGACAGCCAACUAUGCAAAUGGGAUUGGGUUGCAACCCCUUUCAGCAAUUGAUGGCUAG
...........((((((((((((.....))))...))))))))(((((((((....((((.....))))....(((...((..(..((((....)))).)..))))).))))))))).. ( -37.90)
>consensus
CGAAAGCAAAAUCAUUUCCGCUUCGCU______GAGGAGAUGAAGUCGUUAGGCGAUGG______GCUAACUAUGCAAACAGGGUU_______AAUCUCUGC___UAAUUGCUGACUAA
...........((((((((................))))))))(((((....(((((........((.......))...(((((............)))))......)))))))))).. (-19.28 = -18.67 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:21 2006