Locus 2183

Sequence ID 2R_DroMel_CAF1
Location 8,072,050 – 8,072,143
Length 93
Max. P 0.518328
window3607

overview

Window 7

Location 8,072,050 – 8,072,143
Length 93
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 90.80
Mean single sequence MFE -33.66
Consensus MFE -26.98
Energy contribution -27.90
Covariance contribution 0.92
Combinations/Pair 1.07
Mean z-score -1.36
Structure conservation index 0.80
SVM decision value -0.03
SVM RNA-class probability 0.518328
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8072050 93 + 20766785
UGUUUACAAGUUGACAGAUUGCAGAAGCUGCCGUUCCUCGAGUGGAGGCACACUCCGGUAAACUGGGGGCGUCCGACUUGAGCCGCAGCGCAA----
((((........))))..((((....(((((.(...((((((((((.((...((((((....)))))))).))).)))))))).)))))))))---- ( -34.50)
>DroSec_CAF1 37055 93 + 1
UGUUUACAAGUUGACAGAUUGCAGAAGCUGCCGUUCCUCGAGUGGAGGCACACUCCGGUAAACUGGGGGCGUCCGACUUGAGCCGCAGCGCAA----
((((........))))..((((....(((((.(...((((((((((.((...((((((....)))))))).))).)))))))).)))))))))---- ( -34.50)
>DroEre_CAF1 35532 93 + 1
UGUUUACAAGUUGACAGAUUGCAGAAGCUGCCGUUCCUCGAGUGGAGGCACACUCCGGUAAACUGGGGGCGUCCGACUUGAGCCGUAGCACAA----
((((........))))..........(((((.(...((((((((((.((...((((((....)))))))).))).)))))))).)))))....---- ( -31.80)
>DroYak_CAF1 35426 93 + 1
UGUUUACAAGUUGACAGAUUGCAGAAGCUGCCGUUCCUCGAGUGGAGGCACACUCCGGUAAACUGGGGGCGUCCGACUUGAGCCGCAGCACAA----
((((........))))..........(((((.(...((((((((((.((...((((((....)))))))).))).)))))))).)))))....---- ( -33.80)
>DroAna_CAF1 36090 94 + 1
UGUUUACAAGUUGACAGAUUGCAGAGGCUGCCGGUGCUCGAGUGGAGGCACACGCCGGAAAACUUGGGG---GCGGCUUGAGCUGGAGCUGGAGCAG
(((((...((((..(((....((..(((((((....(((((((...(((....))).....))))))))---))))))))..))).)))).))))). ( -33.70)
>consensus
UGUUUACAAGUUGACAGAUUGCAGAAGCUGCCGUUCCUCGAGUGGAGGCACACUCCGGUAAACUGGGGGCGUCCGACUUGAGCCGCAGCACAA____
((((........))))..........(((((.(...((((((((((.((...((((((....)))))))).))).)))))))).)))))........ (-26.98 = -27.90 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:20 2006