| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,069,139 – 8,069,241 |
| Length | 102 |
| Max. P | 0.871316 |
| Location | 8,069,139 – 8,069,241 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 83.82 |
| Mean single sequence MFE | -19.62 |
| Consensus MFE | -14.70 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8069139 102 + 20766785 CCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUUUUCACUCAAAACGACGGCAAA--CAGCUACAAAGUGCAUCAAAUUCAUUUUUAAAUUUU-CAAAAU-UUU ....(((((((((((((....))))))))......................(((...--..)))...))))).......................-......-... ( -16.70) >DroSim_CAF1 18098 102 + 1 CCCUCGCCUUCUGCGUCCACGGAUGCGGAUCACUUUUUCACUCAAAGCGAUGGCAAGA---GCUACAAAGUGCAUCAAAUUCAUUUUGAAAUUUUCAAAAAU-UUC .....(((.((((((((....))))))))((.((((.......)))).)).)))..((---((........)).)).......((((((.....))))))..-... ( -23.60) >DroEre_CAF1 32632 94 + 1 CCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUU-UGACUCAAAC----------AGCAUCAACAAAGUGCAUCAAAUUCAUUUUGAAAUUUU-CAAAUUUUUU .........((((((((....)))))))).....((-(((.......----------.((((.......)))).(((((.....))))).....)-))))...... ( -19.80) >DroYak_CAF1 32542 93 + 1 CCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUU-UGACUCAAAC----------AGCCUCAACAAAGUGCAUCAAAUUCAUUUUGAAAUUUU-CAAAUU-UUU .........((((((((....)))))))).....((-(((.......----------.((((......)).)).(((((.....))))).....)-))))..-... ( -18.40) >consensus CCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUU_UCACUCAAAC__________A_CAGCAACAAAGUGCAUCAAAUUCAUUUUGAAAUUUU_CAAAAU_UUU .........((((((((....))))))))....................................(((((((.(......)))))))).................. (-14.70 = -14.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:17 2006