Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,058,473 – 8,058,574 |
Length | 101 |
Max. P | 0.999273 |
Location | 8,058,473 – 8,058,574 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -16.84 |
Consensus MFE | -11.77 |
Energy contribution | -12.17 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.70 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8058473 101 + 20766785 AACUGCAACCCAAAAA-UGCAACUGCAUU--UUCCAGCUGCCCCAGACGAGUUGCAUAAUCCCCCCGAACCAAACCCACUUGCACUGAUAUGCAAAACACAAAA ...((((((.(.((((-(((....)))))--))...((((...))).)).)))))).......................(((((......)))))......... ( -17.00) >DroSec_CAF1 23641 97 + 1 AACUGCAACCCAAAAA-UGCAACUGCAUU--UUCCAGCUGCCCCAGACGAGUUGCAUAAUCCCCGCAAACCAAACCCACUUGCACUGAUAUGCAAAA----AAA ....(((.(...((((-(((....)))))--))...).)))..........(((((((.((...((((...........))))...)))))))))..----... ( -17.40) >DroSim_CAF1 7546 98 + 1 AACUGCAACCCAAAAA-UGCAACUGCAUU--UUCCAGCUGCCCCAGACGAGUUGCAUAAUCCCCGCAAACCAAACCCACUUGCACUGAUAUGCAAAA---AAAA ....(((.(...((((-(((....)))))--))...).)))..........(((((((.((...((((...........))))...)))))))))..---.... ( -17.40) >DroEre_CAF1 21880 98 + 1 AACUGAAACCCAAAAACUGCAACUGCAUUUUUUCCAGCUGCCCCAGACGAGUUGCAUAAUCUCAAUGAACCAAACCCACUUGGACUGAUAUGCAAAA---A--- ..................(((.(((.(.....).))).)))..........(((((((.((.....)).((((......)))).....)))))))..---.--- ( -13.60) >DroYak_CAF1 21805 95 + 1 AACUGCAACCCAAAAA-UGCAACUGCAUU--UUCCAGCUGCCCCAGACGAGUUGCAUAAUCCCAGUGAGCCAAACCCACUUGCACUGAUAUGCAAAA---A--- ....(((.(...((((-(((....)))))--))...).)))..........(((((((....(((((...(((......)))))))).)))))))..---.--- ( -18.80) >consensus AACUGCAACCCAAAAA_UGCAACUGCAUU__UUCCAGCUGCCCCAGACGAGUUGCAUAAUCCCCGCGAACCAAACCCACUUGCACUGAUAUGCAAAA___AAAA ...((((((.........(((.(((.(.....).))).))).........)))))).......................(((((......)))))......... (-11.77 = -12.17 + 0.40)
Location | 8,058,473 – 8,058,574 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -27.18 |
Energy contribution | -27.02 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -2.87 |
Structure conservation index | 0.85 |
SVM decision value | 3.48 |
SVM RNA-class probability | 0.999273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8058473 101 - 20766785 UUUUGUGUUUUGCAUAUCAGUGCAAGUGGGUUUGGUUCGGGGGGAUUAUGCAACUCGUCUGGGGCAGCUGGAA--AAUGCAGUUGCA-UUUUUGGGUUGCAGUU ........(((((((....)))))))....((..(..((((..(......)..)))).)..))((((((.(((--(((((....)))-))))).)))))).... ( -32.10) >DroSec_CAF1 23641 97 - 1 UUU----UUUUGCAUAUCAGUGCAAGUGGGUUUGGUUUGCGGGGAUUAUGCAACUCGUCUGGGGCAGCUGGAA--AAUGCAGUUGCA-UUUUUGGGUUGCAGUU ...----..(((((((((..((((((.........))))))..)).)))))))(((....)))((((((.(((--(((((....)))-))))).)))))).... ( -33.40) >DroSim_CAF1 7546 98 - 1 UUUU---UUUUGCAUAUCAGUGCAAGUGGGUUUGGUUUGCGGGGAUUAUGCAACUCGUCUGGGGCAGCUGGAA--AAUGCAGUUGCA-UUUUUGGGUUGCAGUU ....---..(((((((((..((((((.........))))))..)).)))))))(((....)))((((((.(((--(((((....)))-))))).)))))).... ( -33.40) >DroEre_CAF1 21880 98 - 1 ---U---UUUUGCAUAUCAGUCCAAGUGGGUUUGGUUCAUUGAGAUUAUGCAACUCGUCUGGGGCAGCUGGAAAAAAUGCAGUUGCAGUUUUUGGGUUUCAGUU ---.---..(((((((((((((((((....)))))...)))))...))))))).....(((..((..(..((((...(((....))).))))..)))..))).. ( -25.90) >DroYak_CAF1 21805 95 - 1 ---U---UUUUGCAUAUCAGUGCAAGUGGGUUUGGCUCACUGGGAUUAUGCAACUCGUCUGGGGCAGCUGGAA--AAUGCAGUUGCA-UUUUUGGGUUGCAGUU ---.---..(((((((...((.(.((((((.....)))))).).)))))))))(((....)))((((((.(((--(((((....)))-))))).)))))).... ( -35.30) >consensus UUUU___UUUUGCAUAUCAGUGCAAGUGGGUUUGGUUCGCGGGGAUUAUGCAACUCGUCUGGGGCAGCUGGAA__AAUGCAGUUGCA_UUUUUGGGUUGCAGUU .........((((((....))))))(((((.....)))))........(((((((((......(((((((.(.....).)))))))......)))))))))... (-27.18 = -27.02 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:11 2006