| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,055,464 – 8,055,573 |
| Length | 109 |
| Max. P | 0.877253 |
| Location | 8,055,464 – 8,055,573 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.07 |
| Mean single sequence MFE | -25.57 |
| Consensus MFE | -14.11 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8055464 109 - 20766785 GCUGGACAUAGUGAUGGUCUUCGUUCGGUGACAGCAAGUGCCCAUUAAAUCAUAUAUCUUAUGAAUAAUUC-----------AUAAGAGUAUAUCUUCAUCUAAGUUCAAAUCAAAUUUG ..(((((.(((((((((.(((.(((.(....)))))))...))))))....(((((((((((((.....))-----------)))))).)))))......))).)))))........... ( -24.70) >DroSec_CAF1 20409 108 - 1 GCUGGACAUAGAGAUGGUCAUAGUUUGGUGACAGGAAGUGACCAAAGAAUCAUAUAUCAUAUGAAUAAUUUUAUGAAUACACCUUUGAGUAUUUUUGCAUCUGAU------------UUG ((....(((((((.(((((((..((((....))))..))))))).....((((((...))))))....)))))))(((((........)))))...)).......------------... ( -25.70) >DroSim_CAF1 4312 109 - 1 GCUAGACAUAGAGAUGGUCAUCGUUUGGUGACAGGAAGUGACCAAAGAAUCAUAUAUCAUAUGAAUAAUUC-----------AUAAGAGUAUUUAUUCAUCUAAGUUCAAAUCAAAUUUG ....(((.((((..(((((((..((((....))))..)))))))..((((......((.(((((.....))-----------))).))......)))).)))).)))............. ( -26.30) >consensus GCUGGACAUAGAGAUGGUCAUCGUUUGGUGACAGGAAGUGACCAAAGAAUCAUAUAUCAUAUGAAUAAUUC___________AUAAGAGUAUUUAUUCAUCUAAGUUCAAAUCAAAUUUG ..((((........(((((((..((((....))))..))))))).....(((((.....)))))...................................))))................. (-14.11 = -15.00 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:03 2006