Locus 2173

Sequence ID 2R_DroMel_CAF1
Location 8,054,840 – 8,054,931
Length 91
Max. P 0.995892
window3588

overview

Window 8

Location 8,054,840 – 8,054,931
Length 91
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 95.14
Mean single sequence MFE -24.02
Consensus MFE -24.12
Energy contribution -23.96
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 1.00
SVM decision value 2.63
SVM RNA-class probability 0.995892
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8054840 91 + 20766785
GCGACCUGCGUGCUGUCAUAAAUAAAUAUGUGUACGUACAUGGUGCGUUUGUGUUGAGCAUGAAAAAUUUAUUGUUCAGUGCUU---------UUCUUGU
((.((((((((((...((((......)))).)))))))...)))))....(..(((((((............)))))))..)..---------....... ( -24.30)
>DroSec_CAF1 19823 91 + 1
GCGACCUGCGUGCUGUCAUAAAUAAAUAUGUGUACGUACAUGGUGCGUUUGUGUUGAGCAUGAAAAAUUUAUUGUUCAGUGCUU---------UUCUUGU
((.((((((((((...((((......)))).)))))))...)))))....(..(((((((............)))))))..)..---------....... ( -24.30)
>DroSim_CAF1 3697 91 + 1
GCGACCUGCGUGCUGUCAUAAAUAAAUAUGUGUACGUACAUGGUGCGUUUGUGUUGAGCAUGAAAAAUUUAUUGUUCAGUGCUU---------UUCUUGU
((.((((((((((...((((......)))).)))))))...)))))....(..(((((((............)))))))..)..---------....... ( -24.30)
>DroEre_CAF1 18113 100 + 1
GCGACCUGCGUGCUGUCAUAAAUAAAUAUGUGUACGUACAUGGUGCGUUUGUGUUGAGCAUGAAAAAUUUAUUGUUCAGUGCGUUUCUUGCGUUUCUUGU
((((...(((..(((.....(((((((.......(((((...)))))((..((.....))..))..)))))))...)))..)))...))))......... ( -25.10)
>DroYak_CAF1 18041 91 + 1
GCGACCUGCGUGCUGUCAUAAAUAAAUAUGUGUACGUACAUGGUGCGUUUGUGUUGAGCAUGAAAAAUUUAUUGUUCAGUGUGU---------UUCUUGU
((.((((((((((...((((......)))).)))))))...)))))....(..(((((((............)))))))..)..---------....... ( -22.10)
>consensus
GCGACCUGCGUGCUGUCAUAAAUAAAUAUGUGUACGUACAUGGUGCGUUUGUGUUGAGCAUGAAAAAUUUAUUGUUCAGUGCUU_________UUCUUGU
((.((((((((((...((((......)))).)))))))...)))))....(..(((((((............)))))))..).................. (-24.12 = -23.96 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:02 2006