Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,053,277 – 8,053,380 |
Length | 103 |
Max. P | 0.500000 |
Location | 8,053,277 – 8,053,380 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.64 |
Mean single sequence MFE | -17.08 |
Consensus MFE | -16.78 |
Energy contribution | -16.62 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -1.25 |
Structure conservation index | 0.98 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8053277 103 - 20766785 GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU------UCCAUAGCUUCCCCU-----C------CCGAUGA ....................(((...(((((....)))))..(((((((...........))))))).............------...............-----.------..))).. ( -15.10) >DroSec_CAF1 18308 108 - 1 GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU------UCCAUCGCUUCACUU-----CCCU-ACCCGACGA ...................((((...(((((....)))))..(((((((...........))))))).............------...............-----....-....)))). ( -17.30) >DroSim_CAF1 1526 108 - 1 GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU------UCCAUCGCUUCACUU-----CCCU-ACACGACGA ...................((((...(((((....)))))..(((((((...........))))))).............------...............-----....-....)))). ( -17.30) >DroEre_CAF1 16616 113 - 1 GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCGAAGUUCCCGUCCCAAUCCCAUCCCUUCCCUU-----CCU--UCCUGACAA ..(((((...................(((((....)))))..(((((((...........)))))))..)))))...........................-----...--......... ( -17.90) >DroYak_CAF1 16439 119 - 1 GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCGAACUUCCAAUCCCAA-CCCAUUCCUUCGCUUCCCUUCCUAGUACCGACUA (((((.....................(((((....)))))..(((((((...........)))))))..................-.......................)))))...... ( -17.80) >consensus GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU______UCCAUCGCUUCACUU_____CCC__ACCCGACGA ....................(((...(((((....)))))..(((((((...........)))))))................................................))).. (-16.78 = -16.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:01 2006