| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,052,885 – 8,052,985 |
| Length | 100 |
| Max. P | 0.917324 |
| Location | 8,052,885 – 8,052,985 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.34 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -17.77 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8052885 100 - 20766785 ACAAAAGCUCAUUUGUUCGACGAAAGUAAAAUCGGCUUAGAGGCCAAA--CUAUGCAGCGGUGAGUGAGUGGGUUAAG-----------------UUGCAAGAACUUUAUGGAA-CCACA ......(((((((.(((((((....))......((((....))))...--...)).))))))))))..((((...(((-----------------((.....))))).......-)))). ( -23.70) >DroSec_CAF1 17924 102 - 1 ACAAAAGCUCAUUUGUUCGGCGAAAGUAAAAUCGGCUUAGAGGCCAAACACUAUGCAGCGGUGAGUGAGUGGGUUAAG-----------------UUCCAAGAACUUUAUGGAA-CCACU .....((((((((..((((.((...(((.....((((....))))......)))....)).))))..))))))))..(-----------------(((((.........)))))-).... ( -28.90) >DroSim_CAF1 1142 102 - 1 ACAAAAGCUCAUUUGUUCGGCGAAAGUAAAAUCGGCUUAGAGGCCAAACACUAUGCAGCGGUGAGUGAGUGGGUUAAG-----------------UUCCAAGAACUUUACGGAA-CCACU .....((((((((..((((.((...(((.....((((....))))......)))....)).))))..))))))))..(-----------------((((...........))))-).... ( -27.80) >DroEre_CAF1 16243 100 - 1 ACAAAGGCUCAUUUGUUCGACGAAAGUAAAAUCGGCUUAGAGGCCAAA--CUAUGCAUUGAGUGGUGAGUGGGCUAAG-----------------UUGCAAGAACUUUAUGGAA-CCACU .....((.((((..((((.((....)).....((((((((...(((.(--((((.......)))))...))).)))))-----------------)))...))))...))))..-))... ( -25.20) >DroYak_CAF1 16076 87 - 1 ACAAAAGCUCAUUUGUUCGGCGAAAGUAAAAUCGGCUUAGAGGCCAAA--CUAUGCA----GCGGUGAGUGGGCUAAG-----------------UUCCAAGAACUUUAU---------- .....((((((((..(.((((....))......((((....))))...--.......----.)))..))))))))(((-----------------(((...))))))...---------- ( -24.30) >DroAna_CAF1 19052 117 - 1 ACAAAAGCUCAUUUGCUGAAAGAAAGUGAAAUGAGCUUAGAGGCCGCA--UAAGGCGG-GCUCAUGAAAGGGGUUAAGUAACCAUUCAAGUUGUUUUCCAAGAACUUUAUGGAAAGCACU ....(((((((((((((.......))).)))))))))).(((.((((.--....))))-.))).((((...((((....)))).))))(((.((((((((.........))))))))))) ( -41.10) >consensus ACAAAAGCUCAUUUGUUCGACGAAAGUAAAAUCGGCUUAGAGGCCAAA__CUAUGCAGCGGUGAGUGAGUGGGUUAAG_________________UUCCAAGAACUUUAUGGAA_CCACU .....((((((((..((((((....))......((((....))))................))))..))))))))............................................. (-17.77 = -17.88 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:00 2006