Locus 2170

Sequence ID 2R_DroMel_CAF1
Location 8,052,489 – 8,052,632
Length 143
Max. P 0.994205
window3584 window3585

overview

Window 4

Location 8,052,489 – 8,052,607
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.64
Mean single sequence MFE -26.84
Consensus MFE -24.88
Energy contribution -25.00
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.93
SVM decision value 2.46
SVM RNA-class probability 0.994205
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8052489 118 - 20766785
CUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU--AUAACACAAUUGCGGUCAUAAUAAUAGCAUCAAGACAUGUAACUUCUUACAAGUGACAA
((((((((((((((((((............)))))))))))..))))))).........--....(((...(((.............)))........(((((....))))).))).... ( -24.82)
>DroSec_CAF1 17508 118 - 1
CUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU--AUAACACAAUUGCGGUCAGAAUAAUAGCAUCAAGACAUGUAACUUCUUGAAAGUGACAA
((((((((((((((((((............)))))))))))..))))))).........--....(((...(((.............)))((((((.........))))))..))).... ( -27.42)
>DroSim_CAF1 730 118 - 1
CUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU--AAAACACAAUUGCGGUCAGAAUAAUAGCAUCAAGACAUGUAACUUCUUGAAAGUGACAA
((((((((((((((((((............)))))))))))..))))))).........--....(((...(((.............)))((((((.........))))))..))).... ( -27.42)
>DroEre_CAF1 15866 119 - 1
CUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCGAUAUACAUAACACAAUUGCGGUCAGAAUAAUAGCAUCGAAGCAUGUA-CUUUUGGAAAGUGUCAA
(((((....((((.(((((.((........))....(((((.(((((.....))))))))))...))))))))).))))).......((......)).((((-(((.....))))).)). ( -27.10)
>DroYak_CAF1 15665 120 - 1
CUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAUACAUAACACAAUUGCGGUCAGAAUAAUAGCAUCAAGACAUGUAACUUCUUGAAAGUGACAG
((((((((((((((((((............)))))))))))..)))))))...............(((...(((.............)))((((((.........))))))..))).... ( -27.42)
>consensus
CUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU__AUAACACAAUUGCGGUCAGAAUAAUAGCAUCAAGACAUGUAACUUCUUGAAAGUGACAA
((((((((((((((((((............)))))))))))..)))))))...............(((...(((.............)))((((((.........))))))..))).... (-24.88 = -25.00 +   0.12)

alignment

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secondary structure

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dotplot

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Window 5

Location 8,052,529 – 8,052,632
Length 103
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 95.79
Mean single sequence MFE -24.34
Consensus MFE -21.88
Energy contribution -21.88
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.90
SVM decision value 1.57
SVM RNA-class probability 0.964876
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8052529 103 - 20766785
UCAUCCUCAGCAAAACUACGGAACUCUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU--AUAACACAAUUGCGGUCAU
.........((((..(....)..((((((((((((((((((((............)))))))))))..))))))).))......--.........))))...... ( -24.50)
>DroSec_CAF1 17548 103 - 1
UCAUCCUCAGCCAAACUACGGAACUCUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU--AUAACACAAUUGCGGUCAG
.........(((...(....)..((((((((((((((((((((............)))))))))))..))))))).))......--.............)))... ( -23.30)
>DroSim_CAF1 770 103 - 1
UCAUCCUCAGCCAAACUACGGAACUCUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU--AAAACACAAUUGCGGUCAG
.........(((...(....)..((((((((((((((((((((............)))))))))))..))))))).))......--.............)))... ( -23.30)
>DroEre_CAF1 15905 105 - 1
UCAUCCCCACCGAAACUACGGAACUCUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCGAUAUACAUAACACAAUUGCGGUCAG
......((.(((......)))....((((((((((((((((((............)))))))))))..)))))))..(((((............))))))).... ( -25.90)
>DroYak_CAF1 15705 105 - 1
UCAUCCCCACCGAAACUACGGAACUCUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAUACAUAACACAAUUGCGGUCAG
........((((...(....)..((((((((((((((((((((............)))))))))))..))))))).))....................))))... ( -24.70)
>consensus
UCAUCCUCAGCCAAACUACGGAACUCUGGCAAAUGCAAAUUGUGAGCAGACAAAAGCAAUUUGUGUCAUUGCCAGCAGCCAUAU__AUAACACAAUUGCGGUCAG
....((.((......(....)..((((((((((((((((((((............)))))))))))..))))))).))..................)).)).... (-21.88 = -21.88 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:59 2006