Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,552,766 – 1,552,882 |
Length | 116 |
Max. P | 0.689428 |
Location | 1,552,766 – 1,552,882 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.62 |
Mean single sequence MFE | -29.33 |
Consensus MFE | -23.60 |
Energy contribution | -23.35 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.24 |
Mean z-score | -1.62 |
Structure conservation index | 0.80 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1552766 116 - 20766785 ---UGAUAAUGCCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGAAAAUAUUU-UUGGAAACUGAGAAUUGCUGUUGAAUUUACAUUCUUCAUAA ---...........(((..(((...)))..)))(((..(((.(((((((((((((((...........((((....))-))(....)...)))))))))..)))))).)))..))).... ( -23.70) >DroSec_CAF1 2314 119 - 1 UGGUAAUAAUACCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGUACAUAUUU-UUGGAAACUGAUAAUCGCUGUUGAAUUUGUAUUCUUCACAU (((((....)))))(((..(((...)))..)))(((..((((((((((((((((((......(((((..(.((.....-.)).)..)))))))))))))..))))))))))..))).... ( -35.60) >DroSim_CAF1 2701 116 - 1 ---UGAUAAUACCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGCACAUCUUU-UUGGAAACUGAUAAUCGCUGUUGAAUUUGUAUUCUUCACAU ---...........(((..(((...)))..)))(((..((((((((((((((((((......(((((....((.....-.))....)))))))))))))..))))))))))..))).... ( -31.60) >DroEre_CAF1 2799 117 - 1 ---UGAUAAGGGCAGGCGACAGUUGCUGCAGCCGAAUUAUGCAAAUGUUGGCGACUUAAUAAAUUCCGGCAAAUAUGUUUGGGAAACAGCUUAUCGCCUAUAAGUUUCUGUUCUUCACAG ---((..(((((((((.((((.((((..............)))).))))(((((.........((((((((....)).)))))).........)))))........)))))))))..)). ( -26.41) >consensus ___UGAUAAUACCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGCAAAUAUUU_UUGGAAACUGAUAAUCGCUGUUGAAUUUGUAUUCUUCACAU ..............(((..(((...)))..)))(((..((((((((((.(((((((((......)))).............(....)......)))))...))))))))))..))).... (-23.60 = -23.35 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:41 2006