| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,051,654 – 8,051,771 |
| Length | 117 |
| Max. P | 0.895362 |
| Location | 8,051,654 – 8,051,771 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.56 |
| Mean single sequence MFE | -35.43 |
| Consensus MFE | -24.53 |
| Energy contribution | -25.21 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8051654 117 - 20766785 AGAAUGUGGAAAUGGAAAAUGUGCGGCGGAUAAUUGCCAUUAAUCAGCCGAGUCCACACAUGGACAUGGCACGUCAUAAGCCGCA--CAG-CACACUACAUCUAAACCAGCGUUUGCCAU (((.(((((...((.....((((((((((.......))........((((.(((((....))))).)))).........))))))--)).-..))))))))))................. ( -36.30) >DroSec_CAF1 16683 117 - 1 AGAAUGUGGAAACGGAAAAUGUGCGGCGGAUAAUUGCCAUUAAUCAGCCGAGUCCACACAUGGACAUGGCACGUCAUAAGCCGCA--CAG-CACACUACAUCUAAACCAGCGUUUGCCAU .....((((((((......((((((((((.......))........((((.(((((....))))).)))).........))))))--))(-(.................)))))).)))) ( -37.13) >DroEre_CAF1 14959 117 - 1 AGAAUGUGGAAAUAGAAACUGUGCGGCGGAUAAUUGCCAUUAAUCAGUAGAGUCCACACAUGGACAUGGCACGUCAUAAGCCGCA--CAG-CACACUACAUCCAAACCAGCGUUUGCCAU .(((((((((..(((...(((((((((.(((...((((((...((....))(((((....))))))))))).)))....))))))--)))-....)))..)))......))))))..... ( -39.20) >DroYak_CAF1 14808 119 - 1 AGAAUGUGGAAAUAGAAACUGUGCGGCUGAUAAUUGCCAUUAAUCAGCCGAGUCCACACAUGGACAUGGCACGUCAUAAGCCGCACACAG-CACACUACAUCCAAACCAGCGUUUGCCAU .....((((..........(((((((((......((((((...((....))(((((....))))))))))).......)))))))))...-...........(((((....))))))))) ( -35.42) >DroAna_CAF1 18141 108 - 1 CCGGCGCGGC-AUCGAAAAUGUGCGGCGGAUAAUUUCCAUUAAUCAGGCAACUCCACACAUGGACGUGGCACGUCAUAAGCCGCA--CAGACACACU-CAUCUAAUCCU--------CAA ..((.(((((-.......(((((.((.(((.....))).......((....)))).))))).((((.....))))....))))).--.(((......-..)))...)).--------... ( -29.10) >consensus AGAAUGUGGAAAUAGAAAAUGUGCGGCGGAUAAUUGCCAUUAAUCAGCCGAGUCCACACAUGGACAUGGCACGUCAUAAGCCGCA__CAG_CACACUACAUCUAAACCAGCGUUUGCCAU ...((((((............((((((.(((...((((((...((....))(((((....))))))))))).)))....))))))..........))))))................... (-24.53 = -25.21 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:55 2006